Motif confirmation by HMMer
hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file: /home/niguts/usr02/tshini/ykclst/db/Pfam_fs
Sequence file: hmm1/seq/B0272.1
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Query: B0272.1 CE00850 locus:tbb-4 tubulin beta chain status:Partially_confirmed SW:P41937 protein_id:CAA86310.1
Scores for sequence family classification (score includes all domains):
Model Description Score E-value N
-------- ----------- ----- ------- ---
tubulin Tubulin/FtsZ family, GTPase domain 376.5 4.3e-110 1
tubulin_C Tubulin/FtsZ family, C-terminal domain 271.4 1.2e-77 1
Cucumo_2B Cucumovirus protein 2B 3.4 9.1 1
Parsed for domains:
Model Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
Cucumo_2B 1/1 97 106 .. 98 107 .] 3.4 9.1
tubulin 1/1 45 244 .. 1 224 [] 376.5 4.3e-110
tubulin_C 1/1 246 383 .. 1 151 [] 271.4 1.2e-77
Alignments of top-scoring domains:
Cucumo_2B: domain 1 of 1, from 97 to 106: score 3.4, E = 9.1
*->AGNEWaEGSF<-*
AGN Wa G +
B0272.1 97 AGNNWAKGHY 106
tubulin: domain 1 of 1, from 45 to 244: score 376.5, E = 4.3e-110
*->arIkVfgvgggggkhYvpRAVnrdlEpgveQegleGVefiainTdaq
+rI+V++++++g ++YvpRA ++dlEpg +++ +++ +++
B0272.1 45 ERINVYYNEASG-GKYVPRACLVDLEPG--------TMD-SVRAGPF 81
alksksLfapeniqiGkelgGtgnngAgGhpeiGeeaaeesldeIrkele
++ Lf+p+n+++G++ G+gnn+A+Gh+++G+e+++ +ld++rke+e
B0272.1 82 GQ----LFRPDNFVFGQS--GAGNNWAKGHYTEGAELVDNVLDVVRKEAE 125
gcdsLdgffithsmGGGTGsGagpvlaeiakeegpptKkilaltvgVvps
cd+L+gf++ths+GGGTGsG+g++l+++++ee+p ++i+ +++ Vvps
B0272.1 126 SCDCLQGFQMTHSLGGGTGSGMGTLLISKIREEYP--DRIMMTFS-VVPS 172
PfvessEgvvrpyNAelglheLlehsDtlividNeaLldicdknlkikda
P+v s++vv+pyNA+l++h+L+e+ D++++idNeaL+dic ++lk++ +
B0272.1 173 PKV--SDTVVEPYNATLSVHQLVENTDETFCIDNEALYDICFRTLKLTTP 220
frvasdlmNdllaqvvsgITdslrfPG<-*
+ ++dl N+l+++++sg+T++lrfPG
B0272.1 221 T--YGDL-NHLVSMTMSGVTTCLRFPG 244
tubulin_C: domain 1 of 1, from 246 to 383: score 271.4, E = 1.2e-77
*->lNvDladvrtnLvPfPRlHFammGyaPlsg.....hralsVleltrq
lN+Dl+++++n+vPfPRlHF+m G+aPl++++++++r+l+V+elt+q
B0272.1 246 LNADLRKLAVNMVPFPRLHFFMPGFAPLTSrgsqqYRSLTVPELTQQ 292
afdspnlmvavdprhkkGaygalanitgrgdvtlkEvneaierireknsd
+fd +n+m+a+dprh G+y+++a+ ++rg++++kEv+e++ ++++kns
B0272.1 293 MFDAKNMMAACDPRH--GRYLTVAA-MFRGRMSMKEVDEQMLNVQNKNS- 338
aqFVeWapiifktaiddeppygvrvsvdLAkvvsgvmtGNtTaksasgeI
++FVeW+p+++kta++d+pp+gv++ ++++GN+Ta I
B0272.1 339 SYFVEWIPNNVKTAVCDIPPRGVKMA--------ATFVGNSTA------I 374
qelfkrile<-*
qelfkri+e
B0272.1 375 QELFKRISE 383