Motif confirmation by HMMer
hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file: /home/niguts/usr02/tshini/ykclst/db/Pfam_fs
Sequence file: hmm1/seq/B0285.4
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Query: B0285.4 CE00643 status:Partially_confirmed SW:P46554 protein_id:CAA84295.1
Scores for sequence family classification (score includes all domains):
Model Description Score E-value N
-------- ----------- ----- ------- ---
LCM Leucine carboxyl methyltransferase 663.7 9.1e-199 1
Omt_N O-methyltransferase N-terminus 18.6 0.00047 1
Parsed for domains:
Model Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
Omt_N 1/1 81 116 .. 87 122 .] 18.6 0.00047
LCM 1/1 29 333 .] 1 328 [] 663.7 9.1e-199
Alignments of top-scoring domains:
Omt_N: domain 1 of 1, from 81 to 116: score 18.6, E = 0.00047
*->vRTrffDdyflaAl..raaGirQVVIhLaAGLDtRAYR<-*
+RT +++y++++l++++++ QVV L++G Dt ++R
B0285.4 81 ARTAAIEKYVRDFLneFDGN-AQVVS-LGCGFDTLFWR 116
LCM: domain 1 of 1, from 29 to 333: score 663.7, E = 9.1e-199
*->rgVqrtndDaslSKAkckrfavrkgyvkDpyikfFvpkkvdkskaRr
++VqrtndDa+ +ck+fa++kgy+kD++i++F+++++++s+aRr
B0285.4 29 YSVQRTNDDAT----QCKYFATQKGYWKDEFISRFANSSSNVSEARR 71
aPeINRGYyaRtvaIrhavrkFLeqttaPqAdgkaQIVNLGaGfDtLfFR
+PeI++GY+aRt+aI+++vr+FL+++ dg+aQ+V+LG+GfDtLf+R
B0285.4 72 FPEISMGYWARTAAIEKYVRDFLNEF-----DGNAQVVSLGCGFDTLFWR 116
LlssgeYiqSqqYldrvkfiEvDFpevverKiehIlkesellsiilglsk
L+ssg ++ vk++EvDF++v+++Ki+hIlk+++++s++l++s+
B0285.4 117 LVSSG--------AKLVKYVEVDFSSVTSKKIRHILKPIGPNSVDLKKSF 158
eeDyvvalsgtdLhsgnYhliGcDLRdlneleekLekcqlldanlPTifi
e+D +v+++++dLh+gnYhliG+DLR++nel++kL++cq l++++PTifi
B0285.4 159 ESD-AVVSHHADLHAGNYHLIGADLRQANELDQKLATCQ-LSHDIPTIFI 206
AECvLvYMepeeSasLikwiaskFenalfvnYEQirpktPnDrFGkvMla
AECvLvYM++++S++L+k+i+s+F++++fvnYEQ+r+ +D+F+kvM++
B0285.4 207 AECVLVYMSADSSTALLKQIVSQFKQPAFVNYEQFRT---SDAFTKVMEQ 253
NLkeSrgspLhGLetYesiEsQrsRFlkaGweeVivvDmneiynsflpea
NL++ rg++LhGLe++es+E+Q++RF++aG++eV+v+Dmn+i+n+fl+++
B0285.4 254 NLGD-RGIQLHGLEMCESAEKQEERFRNAGFKEVKVMDMNQIFNNFLDQK 302
EkkRiesiEpLDElEElqllcqHYcLvhAss<-*
E++Ri++iE+LDE+E+lq+l++HYc+v+A++
B0285.4 303 EVSRIREIEMLDEMELLQQLFAHYCVVSARI 333