Motif confirmation by HMMer
hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file: /home/niguts/usr02/tshini/ykclst/db/Pfam_fs
Sequence file: hmm1/seq/B0286.2
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Query: B0286.2 CE23504 status:Partially_confirmed TR:Q10922 protein_id:AAA80689.2
Scores for sequence family classification (score includes all domains):
Model Description Score E-value N
-------- ----------- ----- ------- ---
7tm_2 7 transmembrane receptor (Secretin fam 383.2 7.1e-114 1
GPS Latrophilin/CL-1-like GPS domain 84.5 5e-22 1
HRM Hormone receptor domain 47.4 2.8e-11 1
trypsin Trypsin 19.3 2.7e-05 2
lectin_c Lectin C-type domain 10.8 0.25 1
Colipase_C Colipase, C-terminal domain 8.8 0.38 1
EGF EGF-like domain 8.2 1.3 1
Gal_Lectin Galactose binding lectin domain 7.1 3.3 1
COX2_TM Cytochrome C oxidase subunit II, trans 5.0 5.9 1
ATP-synt_8 ATP synthase protein 8 4.2 2.8 1
YjgP_YjgQ Predicted permease YjgP/YjgQ family 4.0 4.5 1
Cellulose_synt Cellulose synthase 1.2 5.1 1
Parsed for domains:
Model Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
lectin_c 1/1 4 112 .. 17 125 .] 10.8 0.25
EGF 1/1 124 136 .. 28 45 .] 8.2 1.3
Gal_Lectin 1/1 159 175 .. 1 18 [. 7.1 3.3
HRM 1/1 356 416 .. 1 79 [] 47.4 2.8e-11
COX2_TM 1/1 595 603 .. 81 89 .] 5.0 5.9
GPS 1/1 714 762 .. 1 54 [] 84.5 5e-22
YjgP_YjgQ 1/1 910 945 .. 330 365 .] 4.0 4.5
Cellulose_synt 1/1 950 966 .. 581 597 .. 1.2 5.1
7tm_2 1/1 771 1017 .. 1 273 [] 383.2 7.1e-114
ATP-synt_8 1/1 1052 1086 .. 22 56 .] 4.2 2.8
trypsin 1/2 1199 1213 .. 34 48 .. -0.0 40
Colipase_C 1/1 1354 1380 .. 1 28 [. 8.8 0.38
trypsin 2/2 1291 1407 .. 107 241 .. 18.3 6.1e-05
Alignments of top-scoring domains:
lectin_c: domain 1 of 1, from 4 to 112: score 10.8, E = 0.25
*->ghAHLvsIqsaeEqsfvvafltsltkk........sntyaWIGLt..
++ L ++sae q f + +l+ ++ +++ + +++++ +W+ ++
B0286.2 4 AT--LPLVESAEDQAFFAGYLQAMIPSnppadmrpPPDGIWTAVRgv 48
dintegtwvwegwetdgspvnytenWapgePnnrgnhGgnEdCveiytdt
+ t +wv+ gs ++++++Wap ePn + n n+ Cv++++d
B0286.2 49 NNVTRASWVY----YPGSFLVTDTFWAPQEPNIYVN--YNDVCVALQSD- 91
dflaGkWnDepCdsklpyvCef<-*
+f + W C + vC+
B0286.2 92 SF-YREWTTALCTILKYTVCKV 112
EGF: domain 1 of 1, from 124 to 136: score 8.2, E = 1.3
*->tCeCppGdyylsytGkrC<-*
+C Cp+G y G +C
B0286.2 124 QCSCPNG-----YGGQTC 136
Gal_Lectin: domain 1 of 1, from 159 to 175: score 7.1, E = 3.3
*->LsCpgGqkiisIkfAsyG<-*
sCp+ i + fAs+G
B0286.2 159 FSCPN-DQTITVDFASFG 175
HRM: domain 1 of 1, from 356 to 416: score 47.4, E = 2.8e-11
*->glyCpatwDgilCWPrTpaGtlvvvpCPdyfsGfnydttgedfsngn
+ yC ++ ++ + +T+a++l+++pCPd + g+
B0286.2 356 PRYCKKEKKDGITYEQTRACMLHEQPCPDPQNVE-----------GT 391
asRnCtenGwwerhpnsnwpwpdytnCtspey<-*
++R+C+++ + ++pd tnCt+++
B0286.2 392 VTRYCNCQTAKW-------ETPDTTNCTHRWV 416
COX2_TM: domain 1 of 1, from 595 to 603: score 5.0, E = 5.9
*->lIAlPSLrL<-*
+I++PSL+L
B0286.2 595 TIMFPSLKL 603
GPS: domain 1 of 1, from 714 to 762: score 84.5, E = 5e-22
*->snpiCvfWdeselslgvWstdrGCelvetskpshttCsCnHLTsFAv
snp+Cv+Wd +e +Wst GC l++ts+ ++ +CsC+HLTsFA+
B0286.2 714 SNPRCVYWDLME---SKWST-LGCTLIATSS-NSSQCSCTHLTSFAI 755
Lmdvspn<-*
Lmd s++
B0286.2 756 LMDISGQ 762
YjgP_YjgQ: domain 1 of 1, from 910 to 945: score 4.0, E = 4.5
*->adengklslvlglppflaawlplavflllglwlllr<-*
+++ + ++ ++ p++++ +++++fll++l+ +l
B0286.2 910 WIDTSTPTIWAFVAPIIVIIAANIIFLLIALKVVLS 945
Cellulose_synt: domain 1 of 1, from 950 to 966: score 1.2, E = 5.1
*->dKTeWGkeiGWIYGSVT<-*
d+T WG iGW GS T
B0286.2 950 DRTKWGRIIGWLKGSAT 966
7tm_2: domain 1 of 1, from 771 to 1017: score 383.2, E = 7.1e-114
*->allLkviytVGyslSsLvcLllaiaifllfRkLrctRnyIHmNLfls
a++L+v++t+G+++S +vcL+l++++f++fR+L++ Rn IH+NL+l+
B0286.2 771 ASALDVVSTIGCAIS-IVCLALSVCVFTFFRNLQNVRNSIHRNLCLC 816
fiLralsfLigdavllnsg.CkvvavflhYfflaNFfWmLvEGlYLytLl
+++++l+f ig+++++n+++C vva++lhYffl++F+WmL+EG++Ly++l
B0286.2 817 LLIAELVFVIGMDRTGNRTgCGVVAILLHYFFLSSFCWMLLEGYQLYMML 866
vvtvevffserkrlwwYlliGWGvPavfvtiwaivrpdkygpilaegpag
++vf+++r r++ Y+l+++G Pav+v+i+a+++++ +
B0286.2 867 ---IQVFEPNRTRIFLYYLFCYGTPAVVVAISAGIKWE-----------D 902
ygnegcCWlsndtnsgfwWiikGPilliilvNfiffinilriLvqKlrid
yg++++CW+++ +++ +W++++Pi++ii++N+if++++l++++++ +
B0286.2 903 YGTDSYCWIDT--STPTIWAFVAPIIVIIAANIIFLLIALKVVLSVQS-- 948
slspqtgetdqyrkkrlvkstLlLlPLLGvtwilflfapedqsqGtlslv
+ +t++ +++ ++k++ +Ll+LLG+twi+++++ ++ ++++
B0286.2 949 --RDRTKWGRIIG---WLKGSATLLCLLGITWIFGFLTAVKGG---TGTA 990
flylfliLnSfQGffVavlYCflNgEV<-*
f+++f+iLn++QG+f++vl+++lN++V
B0286.2 991 FAWIFTILNCTQGIFIFVLHVVLNEKV 1017
ATP-synt_8: domain 1 of 1, from 1052 to 1086: score 4.2, E = 2.8
*->iilqlKilshtfpnnpslkktklkkkpnpWnWkWT<-*
i+ ++K++ h +p++ s+ +++ +p + + W+
B0286.2 1052 ILNMIKVNGHSYPSTASTDDKEKQLTPITKTTDWL 1086
[output cut off at A = 10 top alignments]