Motif confirmation by HMMer
hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file: /home/niguts/usr02/tshini/ykclst/db/Pfam_fs
Sequence file: hmm1/seq/B0286.4a
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Query: B0286.4a CE03864 status:Confirmed TR:Q10923 protein_id:AAA80691.1
Scores for sequence family classification (score includes all domains):
Model Description Score E-value N
-------- ----------- ----- ------- ---
NOT NOT2 / NOT3 / NOT5 family 234.5 3.2e-69 1
Gamma-BBH Gamma-butyrobetaine hydroxylase 3.0 4.5 1
Parsed for domains:
Model Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
Gamma-BBH 1/1 161 182 .. 1 22 [. 3.0 4.5
NOT 1/1 209 351 .. 1 189 [] 234.5 3.2e-69
Alignments of top-scoring domains:
Gamma-BBH: domain 1 of 1, from 161 to 182: score 3.0, E = 4.5
*->slvivkwadgesltfpniWLRD<-*
++ i++ +dge++++p+++L D
B0286.4a 161 MHGIITHPDGEVTNIPASMLDD 182
NOT: domain 1 of 1, from 209 to 351: score 234.5, E = 3.2e-69
*->DlttlglnLn.sensvtdkllhttFasPwaseparpylqdiAfYlPe
DlttlglnLn se++ l+++F++Pwa++p+r+ + d+
B0286.4a 209 DLTTLGLNLNlSERK-----LYMNFGGPWADSPIRAHELDV------ 244
fnsvkvPesYsqnpppirdslepqQaPiinnslilkrlrafsedtLFfiF
kvPe+Y+++++ ird+l p l+l++ +sed LF++F
B0286.4a 245 ----KVPEEYMTHNH-IRDKLPP---------LRLNK---VSEDVLFYLF 277
YympgdvaQllAAkELFkkRgWRyHKeervWftRhpgmePdknkvitdpq
Y++p++++Q +AA+EL + R+WR+HK e+vW+tR ++ ++ +k++t+
B0286.4a 278 YNCPNEIYQVAAACEL-YAREWRFHKSEQVWLTRSQY-GG--VKEQTG-- 321
riEGeyErGtYryFDpekseelradWkqirkegdFtleYeyLe<-*
+yE+G+Y++FD++ + W++i+ke ++leY++Le
B0286.4a 322 ----NYEKGHYNVFDQM-Q------WRKIPKE--LKLEYKELE 351