Motif confirmation by HMMer
hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file: /home/niguts/usr02/tshini/ykclst/db/Pfam_fs
Sequence file: hmm1/seq/B0361.6
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Query: B0361.6 CE00835 status:Partially_confirmed SW:Q10950 protein_id:AAK18867.1
Scores for sequence family classification (score includes all domains):
Model Description Score E-value N
-------- ----------- ----- ------- ---
DUF171 Uncharacterized ACR, COG2106 71.4 2.3e-19 2
Parsed for domains:
Model Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
DUF171 1/2 67 111 .. 1 45 [. 34.7 6.1e-09
DUF171 2/2 144 203 .. 66 129 .. 35.7 3.1e-09
Alignments of top-scoring domains:
DUF171: domain 1 of 2, from 67 to 111: score 34.7, E = 6.1e-09
*->kySicIPtslleecrdLkikTYKVyqIARaAslFnVeeIvIyeds<-
Si+ P l + ++ TY ++qIARaA l +V+eI+Iy+ s
B0361.6 67 TISIAVPGQFLNNAQSAELRTYMAGQIARAATLYRVDEIIIYDES 111
*
B0361.6 - -
DUF171: domain 2 of 2, from 144 to 203: score 35.7, E = 3.1e-09
*->IatLLqYfeTPqYLRktvFkkpikpyLkyAgvLPPLstlPfhraktk
+a +L+Y+e PqYLRk F pi + Lk Ag+L PL +h
B0361.6 144 LAKILEYLECPQYLRKDLF--PIQKPLKNAGLLNPLD-AQHHLKY-D 186
pkeGeyREGLtikrqkk<-*
k+ + REG++ k +k
B0361.6 187 EKTLRFREGVVLKKRSK 203