Motif confirmation by HMMer
hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file: /home/niguts/usr02/tshini/ykclst/db/Pfam_fs
Sequence file: hmm1/seq/B0393.2
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Query: B0393.2 CE00855 Probable rabGAP domains status:Partially_confirmed TR:Q17491 protein_id:CAA86055.1
Scores for sequence family classification (score includes all domains):
Model Description Score E-value N
-------- ----------- ----- ------- ---
TBC TBC domain 79.8 3.1e-22 2
Auxin_BP Auxin binding protein 1.8 7.1 1
Parsed for domains:
Model Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
TBC 1/2 120 184 .. 116 219 .. 49.2 2.3e-13
Auxin_BP 1/1 170 192 .. 147 170 .] 1.8 7.1
TBC 2/2 271 321 .. 251 316 .. 32.0 2.1e-08
Alignments of top-scoring domains:
TBC: domain 1 of 2, from 120 to 184: score 49.2, E = 2.3e-13
*->dkIekDlsRTfpdeiffqtrlaeqqlkkdqdldaydkDEfddeddkn
d+I kD+sRTfp+++ffq+
B0393.2 120 DIIGKDVSRTFPEIEFFQNT--------------------------- 139
eppsikqLrrlLvaYswknpqehlgYvQGMnvilspLLlflkhgvdldei
+++ ++++L Y+ +p ++Y QGM++il+pL+ + +
B0393.2 140 --SIRQMMSDILLVYAKEHPF--VNYRQGMHEILAPLIFVIY-------- 177
deeqAFw<-*
+++ AF+
B0393.2 178 SDNEAFQ 184
Auxin_BP: domain 1 of 1, from 170 to 192: score 1.8, E = 7.1
*->AkLkfPyyWDEeCleaakkpkdEL<-*
A L f y D e ++ ak+ dEL
B0393.2 170 APLIFVIYSDNEAFQHAKE-NDEL 192
TBC: domain 2 of 2, from 271 to 321: score 32.0, E = 2.1e-08
*->lvkeslPeLyshlkkkenktgsgkKknllaldltllifafpwfLtlF
l+ e++P L++hl+ d+++ ++ ++w+++lF
B0393.2 271 LLHEIDPTLAKHLSTL---------------DIPPQLYGIRWLRLLF 302
arelPleivlrIwDilfty<-*
+relPl ++l +wD+l+ +
B0393.2 303 GRELPLHDLLFLWDVLLID 321