Motif confirmation by HMMer
hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file: /home/niguts/usr02/tshini/ykclst/db/Pfam_fs
Sequence file: hmm1/seq/B0393.5
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Query: B0393.5 CE00858 EGF-like aspartic acid and asparagine hydroxylation sites status:Partially_confirmed TR:Q17494 protein_id:CAA86058.1
Scores for sequence family classification (score includes all domains):
Model Description Score E-value N
-------- ----------- ----- ------- ---
EGF EGF-like domain 67.9 1.8e-17 11
DSL Delta serrate ligand 3.7 8.8 2
PAN PAN domain 3.5 6.9 1
Parsed for domains:
Model Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
DSL 1/2 180 190 .. 57 67 .] 1.3 48
EGF 1/11 215 238 .. 1 30 [. 9.3 0.65
EGF 2/11 244 269 .. 1 31 [. 3.5 28
PAN 1/1 258 279 .. 37 61 .. 3.5 6.9
EGF 3/11 373 400 .. 1 45 [] 7.0 2.9
EGF 4/11 406 441 .. 1 45 [] 20.3 0.00049
EGF 5/11 454 481 .. 1 43 [. 9.0 0.76
EGF 6/11 492 528 .. 1 45 [] 19.2 0.001
EGF 7/11 534 567 .. 1 45 [] 30.2 7.9e-07
EGF 8/11 789 799 .. 30 45 .] 2.0 73
EGF 9/11 823 832 .. 31 45 .] 0.3 2.2e+02
DSL 2/2 822 832 .. 57 67 .] 6.5 1.3
EGF 10/11 839 874 .. 1 45 [] 18.3 0.0018
EGF 11/11 880 917 .. 1 45 [] 23.3 7.2e-05
Alignments of top-scoring domains:
DSL: domain 1 of 2, from 180 to 190: score 1.3, E = 48
*->lCleGWkGeyC<-*
lC +G kG +C
B0393.5 180 LCGAGFKGLEC 190
EGF: domain 1 of 11, from 215 to 238: score 9.3, E = 0.65
*->Capnn.pCsngGtCvntpggssdnfggytCe<-*
C+++n+ C n G+C +++ g++ C+
B0393.5 215 CDQENgRCPN-GKCSPGWI------GEPICD 238
EGF: domain 2 of 11, from 244 to 269: score 3.5, E = 28
*->Capnn.pCsng.GtCvntpggssdnfggytCeC<-*
C ++ ++C n + C+ntpg ++ C C
B0393.5 244 CEMGIdNCPNEqPDCLNTPG-------SFLCLC 269
PAN: domain 1 of 1, from 258 to 279: score 3.5, E = 6.9
*->ClneprsgleFvCrsftYnnkskeC<-*
Cln p+ +F C f Y++++++C
B0393.5 258 CLNTPG---SFLCLCFEYDEAQQKC 279
EGF: domain 3 of 11, from 373 to 400: score 7.0, E = 2.9
*->CapnnpCsngGtCvntpggssdnfggytCeCppGdyylsytGkrC<-
Ca C+++++C n+ C+C +G + ++G rC
B0393.5 373 CAR---CDQNAKCSNG-----------VCTCSEG---FTGDGFRC 400
*
B0393.5 - -
EGF: domain 4 of 11, from 406 to 441: score 20.3, E = 0.00049
*->Capnn.pCsngGtCvntpggssdnfggytCeCppGdyylsytGkrC<
C + +C + +C nt g +++C+C+ G + + +C
B0393.5 406 CEIPGaVCRDHSICSNTIG-------SFECTCHGG---YRFEDGKC 441
-*
B0393.5 - -
EGF: domain 5 of 11, from 454 to 481: score 9.0, E = 0.76
*->CapnnpCsngGtCvntpggssdnfggytCeCppGdyylsytGk<-*
C ++ + g +C+n g +++C C+ G y G+
B0393.5 454 CGDP---NKGTKCINKDG-------TFECLCKDG-----YEGD 481
EGF: domain 6 of 11, from 492 to 528: score 19.2, E = 0.001
*->CapnnpCsngGtCvntpggssdnfggytCeCppGdyylsytGkrC<-
C ++ C + +C+nt g gy+CeC G ++ G +C
B0393.5 492 CKNPDACGPNSQCTNTQG-------GYECECLAG-FERIAEGAHC 528
*
B0393.5 - -
EGF: domain 7 of 11, from 534 to 567: score 30.2, E = 7.9e-07
*->CapnnpCsngGtCvntpggssdnfggytCeCppGdyylsytGkrC<-
Ca + pC+ ++C nt+g +y+CeC G + ++Gk+C
B0393.5 534 CAVE-PCHPAAICSNTRG-------SYKCECRDG---FVGDGKTC 567
*
B0393.5 - -
EGF: domain 8 of 11, from 789 to 799: score 2.0, E = 73
*->eCppGdyylsytGkrC<-*
eC+ G G++C
B0393.5 789 ECAAG-----HYGINC 799
[output cut off at A = 10 top alignments]