Motif confirmation by HMMer
hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file: /home/niguts/usr02/tshini/ykclst/db/Pfam_fs
Sequence file: hmm1/seq/B0395.1
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Query: B0395.1 CE30842 locus:nhx-1 Sodium\/Proton antiporter status:Partially_confirmed TN:CAB09132 protein_id:CAB09132.2
Scores for sequence family classification (score includes all domains):
Model Description Score E-value N
-------- ----------- ----- ------- ---
Na_H_Exchanger Sodium/hydrogen exchanger family 406.3 3e-118 1
Parsed for domains:
Model Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
Na_H_Exchanger 1/1 1 388 [. 19 446 .] 406.3 3e-118
Alignments of top-scoring domains:
Na_H_Exchanger: domain 1 of 1, from 1 to 388: score 406.3, E = 3e-118
*->fkrlgkaiPeslllllaGlllGpiglgliv....ldsevffeilLpp
++r ++++Pes +l+++Gl+ G+++ l + l +++ff++lLpp
B0395.1 1 MPRARHFFPESAVLIVLGLFAGFTIYELWTvdlfLHPDLFFLYLLPP 47
ilFeaGleldlrelfrnlgsilllAvlGvlisavgiGlllyalvpilgfg
i++eaG++++++ + n+ +i l+Av G++ ++++++++++a+ + f+
B0395.1 48 IVLEAGYFMPNKAFISNITTISLFAVAGTVMNIFLTSCFIFAFQNFYDFN 97
gqlvdldllaaLlfGailsATDPvavlavlkfgelkrvnkrlgtlifGES
++ ++ Llf+ ++sA+DPvavl+v++ e+ +vnk l++++fGES
B0395.1 98 -----ITIVDTLLFSTVISAVDPVAVLSVFE--EI-HVNKLLYITVFGES 139
llNDavavVllavlisfaqggdnseaveafdifsgvilsflvvflGGili
llNDav+vVl++ + s+ g +++ d+ ++f+ v++GGil+
B0395.1 140 LLNDAVTVVLYHSFHSMVRIG--QAHLIYQDYTMS-MMNFFLVSGGGILV 186
GlvlgpkfllslitrftddegPledrliepllvlllaylayllAemlglS
G+v++ +++l ++ + + +++p++++ ++y+ayl++e++++S
B0395.1 187 GVVFA--VVAALGVKWSSN-----VSVLQPIICITVPYMAYLCSEIVHVS 229
gilavfaaGlalsnayveaniseksrttvkyfwkmlsflfepliFvllGl
gil+++++Gl ++ yv ++ e+ +tvky+ k+ls+++e +iFv+lG
B0395.1 230 GILGIVVCGLCMKS-YVTGSMEERADITVKYTLKTLSSCCEAIIFVFLGF 278
sldlsvlhnwanieDlsestviafillaivaillaRaigVflltlllnff
s++ + +h w+ ++f++++++ +++aR+++Vf+lt++ n++
B0395.1 279 SIFSK-DHKWD----------FGFAIVTVITCFAARFLVVFTLTWVANKW 317
rrekrsnpvsehitfrdqlvigwgGilRGaValalAlsgpltledgtsgp
r +k i +rdq ++++gG lRGa++++l+l++ dg + p
B0395.1 318 RMQK--------ISLRDQTIMAFGG-LRGAICFGLVLTI-----DGEVVP 353
ardlilttaivvvlvTvlvqGitlkplvkklkvke<-*
a++ +++t+++v+++Tv++qG+++kplv l+vk
B0395.1 354 AKPIMISTTLIVIVFTVFIQGTMIKPLVSFLNVKI 388