Motif confirmation by HMMer
hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file: /home/niguts/usr02/tshini/ykclst/db/Pfam_fs
Sequence file: hmm1/seq/B0414.7a
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Query: B0414.7a CE07737 protein kinase status:Partially_confirmed TR:O01837 protein_id:AAB57718.1
Scores for sequence family classification (score includes all domains):
Model Description Score E-value N
-------- ----------- ----- ------- ---
pkinase Protein kinase domain 211.3 1.5e-59 1
Exonuc_VII_S Exonuclease VII small subunit 6.8 3.6 1
Flavodoxin_2 Flavodoxin-like fold 2.8 9.1 1
Parsed for domains:
Model Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
Exonuc_VII_S 1/1 301 322 .. 43 65 .] 6.8 3.6
Flavodoxin_2 1/1 955 979 .. 197 221 .] 2.8 9.1
pkinase 1/1 1125 1388 .. 1 294 [] 211.3 1.5e-59
Alignments of top-scoring domains:
Exonuc_VII_S: domain 1 of 1, from 301 to 322: score 6.8, E = 3.6
*->ekLqqAEqkveKdvLledgeevd<-*
e L A+++v dvL+ ++ vd
B0414.7a 301 ENLRDARKRVS-DVLDKYETLVD 322
Flavodoxin_2: domain 1 of 1, from 955 to 979: score 2.8, E = 9.1
*->vdaisdearaayleryrarlkallg<-*
+d+ ++e++++ l+ r++++ +
B0414.7a 955 MDGLGNEMVEKALALTRQWMQYVEV 979
pkinase: domain 1 of 1, from 1125 to 1388: score 211.3, E = 1.5e-59
*->yelleklGeGsfGkVykakhkdktgkiVAvKilkkekesikekrflr
+ ll ++ +GsfG+V +a ++ ++ + A K+++ +++++k + +
B0414.7a 1125 WALLDHIASGSFGSVHRAMDI-DSHRVIAAKVMR--IQRENHKAIES 1168
EiqilkrLsHpNIvrligvfedtddhlylvmEymegGdLfdylrrnggpl
Ei i ++L H+N+v+++gv +d+ + + mEy+ G L ++ + +
B0414.7a 1169 EINIFRQLIHENLVKYYGVQV-EDSDVIIFMEYCSQGTLERICHGKM--- 1214
sekeakkialQilrGleYLHsngivHRDLKpeNILldendgtvKiaDFGL
+ k ++ ++ +lr+++YLHs++i+HRD+Kp+NI+ld+ ++K++DFG
B0414.7a 1215 DLKMVRQYTNSLLRAVQYLHSHKIIHRDIKPANIFLDKC-TVLKLGDFGC 1263
Arlle....sssklttfvGTpwYmmAPEvi.........legrgysskvD
+ l+++++ ++ + t GTp +m APE+++ +++++++ +++gy++ vD
B0414.7a 1264 SSRLVesstVYGEFQTTAGTPQFM-APEIYsygekdettGSYSGYGRSVD 1312
vWSlGviLyElltggplfpgadlpaftggdevdqliifvlklPfsdelpk
+W+lG ++ ++tg k Pf+++
B0414.7a 1313 IWALGATVVNMMTG--------------------------KVPFEGQ--- 1333
tridpleelfriikrpglrlplpsncSeelkdLlkkcLnkDPskRpGsat
++++ ++ k+ ++++p +++k + + c+++ P++Rp t
B0414.7a 1334 -TRHQIAFALCFRKQ-KPTYPDIADKRPDVKRFFDNCFEFLPNDRP---T 1378
akeilnhpwf<-*
a e+l+ +
B0414.7a 1379 AAELLQTTFA 1388