Motif confirmation by HMMer
hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file: /home/niguts/usr02/tshini/ykclst/db/Pfam_fs
Sequence file: hmm1/seq/B0432.12
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Query: B0432.12 CE07750 status:Partially_confirmed TR:P90996 protein_id:AAB37896.1
Scores for sequence family classification (score includes all domains):
Model Description Score E-value N
-------- ----------- ----- ------- ---
lectin_c Lectin C-type domain 33.6 2.7e-07 2
Xlink Extracellular link domain 6.9 0.021 1
Parsed for domains:
Model Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
Xlink 1/1 30 59 .. 1 32 [. 6.9 0.021
lectin_c 1/2 40 88 .. 1 52 [. 28.9 4.8e-06
lectin_c 2/2 159 181 .. 103 125 .] 4.7 9.7
Alignments of top-scoring domains:
Xlink: domain 1 of 1, from 30 to 59: score 6.9, E = 0.021
*->GeV.FhyrapsgRYkltFeEAqaaClrqgAriA<-*
G V Fh k +F +A++ C+++gA +A
B0432.12 30 GIVaFHKLYHL---KMNFPRAKKHCEQNGAHLA 59
lectin_c: domain 1 of 2, from 40 to 88: score 28.9, E = 4.8e-06
*->esktWaeAelaCqkegghAHLvsIqsaeEqsfvvafltsltkksnty
++++ A++ C++ g+h L+ I s+eE++ ++++ ++ + sn+
B0432.12 40 LKMNFPRAKKHCEQNGAH--LAGITSREEAQKLIDLANEAGE-SNEQ 83
aWIGL<-*
+W+G+
B0432.12 84 YWLGG 88
lectin_c: domain 2 of 2, from 159 to 181: score 4.7, E = 9.7
*->tdflaGkWnDepCdsklpyvCef<-*
t++++G ++D+ Cd+++++ C
B0432.12 159 TPNDPGFLDDIGCDVPRKFFCTE 181