Motif confirmation by HMMer
hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file: /home/niguts/usr02/tshini/ykclst/db/Pfam_fs
Sequence file: hmm1/seq/B0464.2
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Query: B0464.2 CE20456 TPR Domain status:Partially_confirmed SW:Q03560 protein_id:CAA79544.1
Scores for sequence family classification (score includes all domains):
Model Description Score E-value N
-------- ----------- ----- ------- ---
TPR TPR Domain 138.8 7e-38 10
Zn_dep_PLPC Zinc dependent phospholipase C 6.7 0.4 1
Parsed for domains:
Model Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
Zn_dep_PLPC 1/1 100 125 .. 245 270 .. 6.7 0.4
TPR 1/10 177 210 .. 1 34 [] 14.6 0.024
TPR 2/10 212 245 .. 1 34 [] 29.0 1.9e-06
TPR 3/10 320 346 .. 1 27 [. 16.4 0.0071
TPR 4/10 355 388 .. 1 34 [] 27.7 4.4e-06
TPR 5/10 471 504 .. 1 34 [] 27.7 4.2e-06
TPR 6/10 526 559 .. 1 34 [] 9.8 0.56
TPR 7/10 594 610 .. 1 17 [. 0.9 2e+02
TPR 8/10 661 677 .. 18 34 .] 15.4 0.014
TPR 9/10 712 745 .. 1 34 [] 10.4 0.37
TPR 10/10 748 774 .. 1 27 [. 1.6 1.3e+02
Alignments of top-scoring domains:
Zn_dep_PLPC: domain 1 of 1, from 100 to 125: score 6.7, E = 0.4
*->fakwaKqdykgiakaakklyYshatm<-*
+a w++q y+ ak++k++++s+at+
B0464.2 100 AAYWMTQGYREKAKDKKSDFFSKATV 125
TPR: domain 1 of 10, from 177 to 210: score 14.6, E = 0.024
*->aeayynlGnaylklgkydeAieayekALeldPnn<-*
+ + ++++ +++++y+ Ai +++kA++ ++
B0464.2 177 VLPLIGKAVIAFNKKDYKTAIYYFRKAIRQCRHT 210
TPR: domain 2 of 10, from 212 to 245: score 29.0, E = 1.9e-06
*->aeayynlGnaylklgkydeAieayekALeldPnn<-*
a+ +G+++ k+g d+A a+e+A e++P n
B0464.2 212 ADLRVGIGHCFAKMGMMDKAKTAFERAMEIEPYN 245
TPR: domain 3 of 10, from 320 to 346: score 16.4, E = 0.0071
*->aeayynlGnaylklgkydeAieayekA<-*
aea+y++G + +++g++d A ++y +A
B0464.2 320 AEAFYQMGRCRHAQGQFDGAYKYYYQA 346
TPR: domain 4 of 10, from 355 to 388: score 27.7, E = 4.4e-06
*->aeayynlGnaylklgkydeAieayekALeldPnn<-*
a+y lG+ y ++++ +eAi++++ + + Pnn
B0464.2 355 TLAHYGLGQMYIHRNEIEEAIKCFDTVHKRLPNN 388
TPR: domain 5 of 10, from 471 to 504: score 27.7, E = 4.2e-06
*->aeayynlGnaylklgkydeAieayekALeldPnn<-*
+e ++n G++y+++++y++A+ ++++A e ++
B0464.2 471 PEMLNNVGALYMSMKQYEKAEHHFKRAKERLEEQ 504
TPR: domain 6 of 10, from 526 to 559: score 9.8, E = 0.56
*->aeayynlGnaylklgkydeAieayekALeldPnn<-*
+ ynl++++++l + eA++ y+ ++ P +
B0464.2 526 LTIRYNLALCLEHLCRTVEAEQMYKDIVKECPGY 559
TPR: domain 7 of 10, from 594 to 610: score 0.9, E = 2e+02
*->aeayynlGnaylklgky<-*
+ +++ +Gn++++++++
B0464.2 594 PIVWTLIGNLHFAKNEW 610
TPR: domain 8 of 10, from 661 to 677: score 15.4, E = 0.014
*->deAieayekALeldPnn<-*
d A++ y+kAL+l+P+n
B0464.2 661 DRALQMYQKALKLQPKN 677
TPR: domain 9 of 10, from 712 to 745: score 10.4, E = 0.37
*->aeayynlGnaylklgkydeAieayekALeldPnn<-*
++++ n+++++++++++ +A++ y A + ++
B0464.2 712 YDVWLNIAHVCMEREQWMAAVQMYSSAMKKFRKE 745
[output cut off at A = 10 top alignments]