hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /home/niguts/usr02/tshini/ykclst/db/Pfam_fs
Sequence file:            hmm1/seq/B0495.5
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Query:  B0495.5  CE29948    status:Confirmed SW:Q09214 protein_id:AAA62531.3

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N
-------- -----------                                    -----    ------- ---
DUF255   Protein of unknown function, DUF255            189.0      2e-55   1
PSP1     PSP1 C-terminal conserved region                 6.9        1.7   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
DUF255     1/1      17    89 ..     1    74 []   189.0    2e-55
PSP1       1/1     402   428 ..     1    28 [.     6.9      1.7

Alignments of top-scoring domains:
DUF255: domain 1 of 1, from 17 to 89: score 189.0, E = 2e-55
                   *->ktNrLiaekSPYLlqHAhnPVdWypWgeeAFakAkaedkPIlLSiGY
                      + NrL++ekSPYLlqHA+nP+dWypWg+eAF+kAk+++kPI+LS+GY
     B0495.5    17    YKNRLGQEKSPYLLQHANNPIDWYPWGQEAFQKAKDNNKPIFLSVGY 63

                   stiCHWChVmakEsfeneeiaailnen<-*
                   st CHWChVm+kEsfene++a+iln+n
     B0495.5    64 ST-CHWCHVMEKESFENEATAKILNDN    89

PSP1: domain 1 of 1, from 402 to 428: score 6.9, E = 1.7
                   *->plksVlRvADtpeDldtlLhknaeeaea<-*
                       +k+VlR+  t+e+ +t+ h++ +++++
     B0495.5   402    KNKNVLRKLLTDEECATN-HEISVAELK    428

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