hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /home/niguts/usr02/tshini/ykclst/db/Pfam_fs
Sequence file:            hmm1/seq/B0495.2
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Query:  B0495.2  CE01761   CDC2 status:Partially_confirmed SW:Q09437 protein_id:AAA62523.1

Scores for sequence family classification (score includes all domains):
Model       Description                                 Score    E-value  N
--------    -----------                                 -----    ------- ---
pkinase     Protein kinase domain                       274.2    1.7e-78   1
Fringe      Fringe-like                                   3.4        1.7   1
Herpes_UL17 Herpesvirus UL17 protein                     -0.1        8.6   1

Parsed for domains:
Model       Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
--------    ------- ----- -----    ----- -----      -----  -------
pkinase       1/1     356   647 ..     1   294 []   274.2  1.7e-78
Herpes_UL17   1/1     707   718 ..   728   739 .]    -0.1      8.6
Fringe        1/1     708   718 ..   243   253 .]     3.4      1.7

Alignments of top-scoring domains:
pkinase: domain 1 of 1, from 356 to 647: score 274.2, E = 1.7e-78
                   *->yelleklGeGsfGkVykakhkdktgkiVAvKilkkekesikek.rfl
                      ye + ++ eG+fG+Vy++k+k  t++iVA+K lk eke++    ++l
     B0495.2   356    YECVNRVDEGTFGVVYRGKDK-RTDEIVALKRLKMEKEKEGFPiTAL 401

                   rEiqilkrLs.HpNIvrligvfed.tddhlylvmEymegGdLfdylrrng
                   rEi +l +  +HpNIv+++++   +  d++y+ mE++e+ d++++l
     B0495.2   402 REINMLLKAGnHPNIVNVKEILLGsNMDKIYMAMEFVEH-DMKSLLDTMS 450

                   ...gplsekeakkialQilrGleYLHsngivHRDLKpeNILldendgtvK
                   +++ ++s  e k +  Q+l+G+e++H   i+HRDLK++N+L +++ g +K
     B0495.2   451 rrnKRFSIGEQKTLLQQLLSGIEHMHKLWILHRDLKTSNLLMSHK-GILK 499

                   iaDFGLArlle.sssklttfvGTpwYmmAPEvileg.rgysskvDvWSlG
                   iaDFGLAr++ ++  k+t++v T+wY+ +PE+ l+g+r ys++vD+WS+G
     B0495.2   500 IADFGLAREYGdPLKKFTSIVVTLWYR-SPEL-LLGtRLYSTPVDMWSVG 547

                   viLyElltggplfpgadlpaftggd.evdqli.if.vlklPfsdelp.kt
                   +i++E    +plfp         g +e++q+ +if  +++P++  +p+ t
     B0495.2   548 CIMAEFILLKPLFP---------GRgELEQIKkIFmEMGTPTESIWPgVT 588

                   ridpleelfriikrp...glrlplpsncSeelkdLlkkcLnkDPskRpGs
                     d++++l   ++  ++ + r+   +++ ++  +Ll+++L++DP++R
     B0495.2   589 ELDGWKALTFEKYPYnqlRKRFLAGRLLNDTGFKLLNGLLTLDPKNRF-- 636

                   atakeilnhpwf<-*
                    +a+++l h wf
     B0495.2   637 -SATQALDHEWF    647

Herpes_UL17: domain 1 of 1, from 707 to 718: score -0.1, E = 8.6
                   *->PGGFaikgryal<-*
                      PGGF +k++ +
     B0495.2   707    PGGFSLKFDPTR    718

Fringe: domain 1 of 1, from 708 to 718: score 3.4, E = 1.7
                   *->GpFsleeDPtR<-*
                      G Fsl+ DPtR
     B0495.2   708    GGFSLKFDPTR    718

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