Motif confirmation by HMMer
hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
HMM file: /home/niguts/usr02/tshini/ykclst/db/Pfam_fs
Sequence file: hmm1/seq/B0511.12
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
Query: B0511.12 CE28877 status:Partially_confirmed TR:O61825 protein_id:AAK95862.1
Scores for sequence family classification (score includes all domains):
Model Description Score E-value N
-------- ----------- ----- ------- ---
Pecanex_C Pecanex protein (C-terminus) 630.7 8.2e-186 1
Glutaminase Glutaminase 3.1 8.3 1
Parsed for domains:
Model Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
Glutaminase 1/1 342 355 .. 277 290 .] 3.1 8.3
Pecanex_C 1/1 996 1229 .. 1 238 [] 630.7 8.2e-186
Alignments of top-scoring domains:
Glutaminase: domain 1 of 1, from 342 to 355: score 3.1, E = 8.3
*->aLekLaqrtglsiF<-*
+++++a++++++iF
B0511.12 342 LAHHVAEQIEMHIF 355
Pecanex_C: domain 1 of 1, from 996 to 1229: score 630.7, E = 8.2e-186
*->eeiaklkvdKdfdselVtlCyaLsllgrrsLgTAsgHilssalesFL
e+ +++dK++++e+VtlC++Lsl++rrsLgTAs++++ssa+esFL
B0511.12 996 EC---VQEDKYDHEEAVTLCFLLSLVARRSLGTASFNRHSSAAESFL 1039
YGLHaLFKGdfRItsvrdeWvfadmeLLrkvvapAvrmaLKLhqDhftlp
YGLH+LFKGdfRIt++rdeWvf+dm++Lr+vv+pAv+maLKLhqDhf+++
B0511.12 1040 YGLHSLFKGDFRITCQRDEWVFTDMDMLRCVVSPAVKMALKLHQDHFAQF 1089
defeDpreLyeaieeyekklvIshesDpaWreAvLankPsLLaLRhvmdd
+ef+++++Ly++i+ey++k++Ishe+Dp+Wr+A+Lan+PsLLaLRh++dd
B0511.12 1090 EEFDENDGLYTVIGEYQTKMFISHEQDPGWRQAILANTPSLLALRHIYDD 1139
GideYkiimLnrryLsfrViKLNrECVRGlWAGqqqELiflrNrnpERGS
G+d+YkiimLn+++L++rViKLNrECVR++WAGqqqELiflrNrnpERGS
B0511.12 1140 GQDDYKIIMLNQMHLNMRVIKLNRECVRAFWAGQQQELIFLRNRNPERGS 1189
IQnakqvLRNlinsSaDqPlGYPIYvSkPLTTSYidsHiqL<-*
IQna+qvLRN+insSaD+P+GYPIYvS PLTTS+i+sH+q+
B0511.12 1190 IQNARQVLRNMINSSADLPVGYPIYVS-PLTTSHIESHSQI 1229