Motif confirmation by HMMer


hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /home/niguts/usr02/tshini/ykclst/db/Pfam_fs
Sequence file:            hmm1/seq/B0513.5
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Query:  B0513.5  CE15561    status:Partially_confirmed SW:O45228 protein_id:CAB05117.1

Scores for sequence family classification (score includes all domains):
Model           Description                             Score    E-value  N
--------        -----------                             -----    ------- ---
Pro_dh          Proline dehydrogenase                   584.2   7.9e-172   1
efhand          EF hand                                   9.5          1   1
CUE             CUE domain                                6.0        4.1   1
B12-binding     B12 binding domain                        5.0          4   1
PCMT            Protein-L-isoaspartate(D-aspartate) O     4.1        4.6   1
DegT_DnrJ_EryC1 DegT/DnrJ/EryC1/StrS aminotransferase     3.7        3.1   1
DUF313          Domain of unknown function (DUF313)       3.5        9.7   1

Parsed for domains:
Model           Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
--------        ------- ----- -----    ----- -----      -----  -------
B12-binding       1/1      59    86 ..   114   142 .]     5.0        4
DegT_DnrJ_EryC1   1/1      76    88 ..   395   407 .]     3.7      3.1
PCMT              1/1      78    94 ..     1    19 [.     4.1      4.6
DUF313            1/1     274   282 ..   121   129 .]     3.5      9.7
efhand            1/1     255   283 ..     1    29 []     9.5        1
CUE               1/1     291   311 ..    23    43 .]     6.0      4.1
Pro_dh            1/1     190   543 ..     1   379 []   584.2 7.9e-172

Alignments of top-scoring domains:
B12-binding: domain 1 of 1, from 59 to 86: score 5.0, E = 4
                   *->paelLkeeggaDavvvGegeeavkelvea<-*
                      ++++L ++ ++ ++v+Ge ee v+  ve+
     B0513.5    59    FKKTL-KNTFFGHFVAGETEEEVRHVVEK    86

DegT_DnrJ_EryC1: domain 1 of 1, from 76 to 88: score 3.7, E = 3.1
                   *->tdeevdrVaeavr<-*
                      t+eev +V+e++r
     B0513.5    76    TEEEVRHVVEKLR    88

PCMT: domain 1 of 1, from 78 to 94: score 4.1, E = 4.6
                   *->arkneaLienLknnGviks<-*
                      ++ + +++e+L+n+G +ks
     B0513.5    78    EE-VRHVVEKLRNYG-VKS    94

DUF313: domain 1 of 1, from 274 to 282: score 3.5, E = 9.7
                   *->kGWNdVVda<-*
                      +GWN ++d+
     B0513.5   274    HGWNHILDD    282

efhand: domain 1 of 1, from 255 to 283: score 9.5, E = 1
                   *->elkeaFkefDkDgDGkIsfeEfkaalkkl<-*
                       +k++F+e+D D DG +++  + ++l +
     B0513.5   255    SVKKFFDEVDFDSDGIVDLHGWNHILDDH    283

CUE: domain 1 of 1, from 291 to 311: score 6.0, E = 4.1
                   *->avLeantgnveatinnLLegs<-*
                      +vL+ +tg++e+ i+nL  ++
     B0513.5   291    QVLNIKTGSLEPLIQNLSNEE    311

Pro_dh: domain 1 of 1, from 190 to 543: score 584.2, E = 7.9e-172
                   *->llgevflfltalGrpllklavseamrlmgrqfvaGetiqsaiktvkr
                      ++g+v++++talGrp+l+l++sea+++++++f+a ++++s +  + r
     B0513.5   190    NEGFVAVKITALGRPQLLLKLSEAIVQTQNFFKALTGGMSLQ--EGR 234

                   lneliseglilsvdmLGvk.drkevkEavltaadAaayveaylqaihaig
                   l+   s++++++   LGvk+d+++vk++++++++++++++++++++h+++
     B0513.5   235 LT---SQEFYKRLGELGVKtDTESVKKFFDEVDFDSDGIVDLHGWNHILD 281

                   kasklskifsvPgistklselllkysEPEPLsleeerfelvmeellprlr
                   ++ kl+++f+v +i+t+++e+l+++      s+eee+   +++++++r++
     B0513.5   282 DHVKLGQLFQVLNIKTGSLEPLIQNL-----SNEEEQ---EFRNMVRRTL 323

                   elaekAqelgvavtiDaEetdrleliDYmYldifkelmfdpenkgregvg
                   ++ae+A e gv++++DaE+t+++++i    ++i++e m++++nkgr +++
     B0513.5   324 DVAEYAIEKGVRIMVDAEQTYLQPAI----SKITIE-MMKKYNKGRGNIF 368

                   nviQAYLrragedidalvalAkregrklgvRLVKGAYwdsErkRAqvkGy
                   n++QAYL+ ++++++a++++A+reg+++g++LV+GAY+++Er+RA+++Gy
     B0513.5   369 NTYQAYLKGTLQNMEADMQVARREGWHFGAKLVRGAYMEQERARAKAIGY 418

                   edppvftdkattdmnyqcltrlllegrny..kkiypmvAsHNadtvafvl
                   edp++++++at++m+++cltr+ +e+++++++++ +mvAsHN+dtv+f+l
     B0513.5   419 EDPINDNFEATSKMYESCLTRIADEVHRRgkTNVSVMVASHNEDTVRFAL 468

                   qlakelgiskadgqfeFqqLyGMgdqlsfeLvkagaDiGKLaynvrkYaP
                   +l+ke++is+++++++++qLyGM+dq+sf+L++ag       ++v+kY+P
     B0513.5   469 NLMKEKCISPSERVMCMAQLYGMCDQVSFSLGQAG-------FSVYKYLP 511

                   yGpvAHFeellaYLvRRLlENganssFvnkerdlk<-*
                   yGpv   ee+l+YL+RR+lENg++++++nkerdl+
     B0513.5   512 YGPV---EEVLPYLSRRALENGSVLKKANKERDLL    543



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