Motif confirmation by HMMer
hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file: /home/niguts/usr02/tshini/ykclst/db/Pfam_fs
Sequence file: hmm1/seq/B0513.5
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Query: B0513.5 CE15561 status:Partially_confirmed SW:O45228 protein_id:CAB05117.1
Scores for sequence family classification (score includes all domains):
Model Description Score E-value N
-------- ----------- ----- ------- ---
Pro_dh Proline dehydrogenase 584.2 7.9e-172 1
efhand EF hand 9.5 1 1
CUE CUE domain 6.0 4.1 1
B12-binding B12 binding domain 5.0 4 1
PCMT Protein-L-isoaspartate(D-aspartate) O 4.1 4.6 1
DegT_DnrJ_EryC1 DegT/DnrJ/EryC1/StrS aminotransferase 3.7 3.1 1
DUF313 Domain of unknown function (DUF313) 3.5 9.7 1
Parsed for domains:
Model Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
B12-binding 1/1 59 86 .. 114 142 .] 5.0 4
DegT_DnrJ_EryC1 1/1 76 88 .. 395 407 .] 3.7 3.1
PCMT 1/1 78 94 .. 1 19 [. 4.1 4.6
DUF313 1/1 274 282 .. 121 129 .] 3.5 9.7
efhand 1/1 255 283 .. 1 29 [] 9.5 1
CUE 1/1 291 311 .. 23 43 .] 6.0 4.1
Pro_dh 1/1 190 543 .. 1 379 [] 584.2 7.9e-172
Alignments of top-scoring domains:
B12-binding: domain 1 of 1, from 59 to 86: score 5.0, E = 4
*->paelLkeeggaDavvvGegeeavkelvea<-*
++++L ++ ++ ++v+Ge ee v+ ve+
B0513.5 59 FKKTL-KNTFFGHFVAGETEEEVRHVVEK 86
DegT_DnrJ_EryC1: domain 1 of 1, from 76 to 88: score 3.7, E = 3.1
*->tdeevdrVaeavr<-*
t+eev +V+e++r
B0513.5 76 TEEEVRHVVEKLR 88
PCMT: domain 1 of 1, from 78 to 94: score 4.1, E = 4.6
*->arkneaLienLknnGviks<-*
++ + +++e+L+n+G +ks
B0513.5 78 EE-VRHVVEKLRNYG-VKS 94
DUF313: domain 1 of 1, from 274 to 282: score 3.5, E = 9.7
*->kGWNdVVda<-*
+GWN ++d+
B0513.5 274 HGWNHILDD 282
efhand: domain 1 of 1, from 255 to 283: score 9.5, E = 1
*->elkeaFkefDkDgDGkIsfeEfkaalkkl<-*
+k++F+e+D D DG +++ + ++l +
B0513.5 255 SVKKFFDEVDFDSDGIVDLHGWNHILDDH 283
CUE: domain 1 of 1, from 291 to 311: score 6.0, E = 4.1
*->avLeantgnveatinnLLegs<-*
+vL+ +tg++e+ i+nL ++
B0513.5 291 QVLNIKTGSLEPLIQNLSNEE 311
Pro_dh: domain 1 of 1, from 190 to 543: score 584.2, E = 7.9e-172
*->llgevflfltalGrpllklavseamrlmgrqfvaGetiqsaiktvkr
++g+v++++talGrp+l+l++sea+++++++f+a ++++s + + r
B0513.5 190 NEGFVAVKITALGRPQLLLKLSEAIVQTQNFFKALTGGMSLQ--EGR 234
lneliseglilsvdmLGvk.drkevkEavltaadAaayveaylqaihaig
l+ s++++++ LGvk+d+++vk++++++++++++++++++++h+++
B0513.5 235 LT---SQEFYKRLGELGVKtDTESVKKFFDEVDFDSDGIVDLHGWNHILD 281
kasklskifsvPgistklselllkysEPEPLsleeerfelvmeellprlr
++ kl+++f+v +i+t+++e+l+++ s+eee+ +++++++r++
B0513.5 282 DHVKLGQLFQVLNIKTGSLEPLIQNL-----SNEEEQ---EFRNMVRRTL 323
elaekAqelgvavtiDaEetdrleliDYmYldifkelmfdpenkgregvg
++ae+A e gv++++DaE+t+++++i ++i++e m++++nkgr +++
B0513.5 324 DVAEYAIEKGVRIMVDAEQTYLQPAI----SKITIE-MMKKYNKGRGNIF 368
nviQAYLrragedidalvalAkregrklgvRLVKGAYwdsErkRAqvkGy
n++QAYL+ ++++++a++++A+reg+++g++LV+GAY+++Er+RA+++Gy
B0513.5 369 NTYQAYLKGTLQNMEADMQVARREGWHFGAKLVRGAYMEQERARAKAIGY 418
edppvftdkattdmnyqcltrlllegrny..kkiypmvAsHNadtvafvl
edp++++++at++m+++cltr+ +e+++++++++ +mvAsHN+dtv+f+l
B0513.5 419 EDPINDNFEATSKMYESCLTRIADEVHRRgkTNVSVMVASHNEDTVRFAL 468
qlakelgiskadgqfeFqqLyGMgdqlsfeLvkagaDiGKLaynvrkYaP
+l+ke++is+++++++++qLyGM+dq+sf+L++ag ++v+kY+P
B0513.5 469 NLMKEKCISPSERVMCMAQLYGMCDQVSFSLGQAG-------FSVYKYLP 511
yGpvAHFeellaYLvRRLlENganssFvnkerdlk<-*
yGpv ee+l+YL+RR+lENg++++++nkerdl+
B0513.5 512 YGPV---EEVLPYLSRRALENGSVLKKANKERDLL 543