Motif confirmation by HMMer
hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file: /home/niguts/usr02/tshini/ykclst/db/Pfam_fs
Sequence file: hmm1/seq/B0523.5
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Query: B0523.5 CE06721 status:Confirmed SW:P34268 protein_id:AAB37088.1
Scores for sequence family classification (score includes all domains):
Model Description Score E-value N
-------- ----------- ----- ------- ---
Gelsolin Gelsolin repeat 284.8 5.7e-83 5
LRR Leucine Rich Repeat 100.7 1.1e-26 16
UreF UreF 3.6 7.9 1
Parsed for domains:
Model Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
LRR 1/16 8 32 .. 1 25 [] 2.1 97
LRR 2/16 33 55 .. 1 25 [] 3.4 43
LRR 3/16 56 78 .. 1 25 [] 12.1 0.15
LRR 4/16 79 103 .. 1 25 [] 5.5 11
LRR 5/16 104 123 .. 1 25 [] 9.0 1.1
LRR 6/16 130 150 .. 4 25 .] 12.5 0.11
LRR 7/16 151 173 .. 1 25 [] 12.2 0.13
LRR 8/16 174 197 .. 1 25 [] 5.6 10
LRR 9/16 198 222 .. 1 25 [] 5.4 12
LRR 10/16 223 245 .. 1 25 [] 7.5 2.8
LRR 11/16 246 260 .. 1 16 [. 11.8 0.18
LRR 12/16 269 291 .. 1 25 [] 15.8 0.013
LRR 13/16 292 316 .. 1 25 [] 7.9 2.3
LRR 14/16 317 339 .. 1 25 [] 11.4 0.22
LRR 15/16 340 362 .. 1 25 [] 14.2 0.036
LRR 16/16 363 385 .. 1 25 [] 2.2 91
Gelsolin 1/5 517 600 .. 1 96 [] 67.6 1.2e-18
Gelsolin 2/5 639 714 .. 1 96 [] 68.7 5.9e-19
UreF 1/1 798 810 .. 142 154 .] 3.6 7.9
Gelsolin 3/5 756 832 .. 1 96 [] 71.6 8.3e-20
Gelsolin 4/5 1083 1133 .. 32 96 .] 18.1 0.00058
Gelsolin 5/5 1164 1243 .. 1 96 [] 58.8 5.1e-16
Alignments of top-scoring domains:
LRR: domain 1 of 16, from 8 to 32: score 2.1, E = 97
*->nLreLdLsgNnlt.gslppdafsgLt<-*
++ +d+sgN ++++ +p d + +t
B0523.5 8 FVKGIDFSGNDFSgDRFPHD-VEQMT 32
LRR: domain 2 of 16, from 33 to 55: score 3.4, E = 43
*->nLreLdLsgNnltgslppdafsgLt<-*
+ + L L++++l+ +p++ +s +
B0523.5 33 QMTWLKLNDSKLE-QVPDE-LSRCA 55
LRR: domain 3 of 16, from 56 to 78: score 12.1, E = 0.15
*->nLreLdLsgNnltgslppdafsgLt<-*
nL++L + +N+l s+ + +s+L+
B0523.5 56 NLEHLQMAHNQLI-SVHGE-LSDLP 78
LRR: domain 4 of 16, from 79 to 103: score 5.5, E = 11
*->nLreLdLsgNnlt.gslppdafsgLt<-*
+Lr+ +++Nnl+++++p d+f+ ++
B0523.5 79 RLRSVIVRDNNLKtAGIPTDIFR-MK 103
LRR: domain 5 of 16, from 104 to 123: score 9.0, E = 1.1
*->nLreLdLsgNnltgslppdafsgLt<-*
L+ +dLs+N+l+ ++p +L
B0523.5 104 DLTIIDLSRNQLR-EVPT----NLE 123
LRR: domain 6 of 16, from 130 to 150: score 12.5, E = 0.11
*->eLdLsgNnltgslppdafsgLt<-*
+L+Ls+Nn++ ++p++++++L
B0523.5 130 VLNLSYNNIE-TIPNSVCANLI 150
LRR: domain 7 of 16, from 151 to 173: score 12.2, E = 0.13
*->nLreLdLsgNnltgslppdafsgLt<-*
L +LdLs+N+l lpp ++ L+
B0523.5 151 DLLSLDLSNNKLD-MLPPQ-IRRLS 173
LRR: domain 8 of 16, from 174 to 197: score 5.6, E = 10
*->nLreLdLsgNnltgslppdafsgLt<-*
L++L Ls+N+l ++ + ++t
B0523.5 174 MLQSLKLSNNPLN-HFQLKQLPSMT 197
LRR: domain 9 of 16, from 198 to 222: score 5.4, E = 12
*->nLreLdLsgNnlt.gslppdafsgLt<-*
+L +L++s++n t + +pp ++++++
B0523.5 198 SLSVLHMSNTNRTlDNIPP-TLDDMH 222
LRR: domain 10 of 16, from 223 to 245: score 7.5, E = 2.8
*->nLreLdLsgNnltgslppdafsgLt<-*
nLr d+s Nnl +p+ a+ +L+
B0523.5 223 NLRDVDFSENNLP-IVPE-ALFKLR 245
[output cut off at A = 10 top alignments]