Motif confirmation by HMMer
hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file: /home/niguts/usr02/tshini/ykclst/db/Pfam_fs
Sequence file: hmm1/seq/B0563.4
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Query: B0563.4 CE30843 status:Confirmed TN:AAA68319 protein_id:AAA68319.2
Scores for sequence family classification (score includes all domains):
Model Description Score E-value N
-------- ----------- ----- ------- ---
UPF0005 Uncharacterised protein family UPF0005 154.5 1.8e-42 1
Parsed for domains:
Model Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
UPF0005 1/1 66 275 .. 1 438 [] 154.5 1.8e-42
Alignments of top-scoring domains:
UPF0005: domain 1 of 1, from 66 to 275: score 154.5, E = 1.8e-42
*->wkigrqdfrRkvyslkvglaLl....lvsllayirpvldgvgenaiw
++++r +f+Rkv +++ g++Ll + +++++ + i+ + ++++a
B0563.4 66 NRMIRIAFLRKVLGIV-GFQLLftigICAAIYNIPNSNQLLQKHAWI 111
ailtvvvvlefsLvclivLScCvgatlnkglnrvlltlfagllgvglgpi
++ +++++++ i+L + +ln+vll++f+++ +v++g +
B0563.4 112 VFPNLLGSIALI----IAL---HVYAREVPLNYVLLAAFTAVQAVTMGCV 154
asmygaifegivivlsaFgiTaavffslslpalktryDygfqlgfiLtfa
++++ a +vl+a +iT++v++sl++++l++++D++ +++++++
B0563.4 155 VTLFEA-----KVVLEAAVITGLVVASLFAYTLQNKRDFSV-GYASMGSL 198
livllgfrivvitnlffWtassrlsliisgagillfvgylvyDtqaiedl
l+vll+++i+ ++ff + s++++++i ++g+ lf+++lv+D+++i+
B0563.4 199 LCVLLWAGIF---QMFF-M-SPAVNFVINVFGAGLFCVLLVIDLDMIM-- 241
hkliannfeklAdSLEgCVneYLeedeyerepskilvyeasedpvysgYr
+++
B0563.4 242 --------YRF--------------------------------------- 244
SvLnSkspeeyiAnfAkWEPpHGrfkfrhPWknYVKvGgalRhCAytVmA
spe+yi
B0563.4 245 ------SPEDYI-------------------------------------- 250
LHGCilsEiQAPeelRqkFkeelqrvsEgaKvLreLaeslkkMrklspsi
B0563.4 - -------------------------------------------------- -
llddvhsAaeeLqskIdsksyLlvnSewiikesmmrkreswpsrsatees
B0563.4 - -------------------------------------------------- -
erqvdeermkslEsaeaLSlaaalsLyldivnlFlslLeifgels<-*
+a++sLy+di+nlF+ +L+i++e++
B0563.4 251 --------------------CACVSLYMDILNLFIRILQIVAEAN 275