Motif confirmation by HMMer
hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file: /home/niguts/usr02/tshini/ykclst/db/Pfam_fs
Sequence file: hmm1/seq/B0564.1
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Query: B0564.1 CE20469 ribonuclease PH like status:Confirmed TN:CAA97771 protein_id:CAA97771.3
Scores for sequence family classification (score includes all domains):
Model Description Score E-value N
-------- ----------- ----- ------- ---
RNase_PH 3' exoribonuclease family, domain 1 187.4 1.3e-52 1
RNase_PH_C 3' exoribonuclease family, domain 2 48.8 1.6e-12 1
PNPase Polyribonucleotide nucleotidyltransferase, 6.4 0.14 1
Parsed for domains:
Model Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
PNPase 1/1 2 15 .. 71 83 .] 6.4 0.14
RNase_PH 1/1 18 147 .. 1 153 [] 187.4 1.3e-52
RNase_PH_C 1/1 150 215 .. 1 90 [] 48.8 1.6e-12
Alignments of top-scoring domains:
PNPase: domain 1 of 1, from 2 to 15: score 6.4, E = 0.14
*->rILdeg.pRIDGRe<-*
+I++e+++RIDGR+
B0564.1 2 NIISEHgFRIDGRR 15
RNase_PH: domain 1 of 1, from 18 to 147: score 187.4, E = 1.3e-52
*->efRpieietGvlprQaaeGSalvelGddTkVlvtvtgeiepparrda
++R+i+ ++G++++ aeGS+++e+G +TkVl++v+g+ e +
B0564.1 18 QIRNINTRLGLNRN--AEGSCYLEHG-NTKVLCAVYGPYEGK----- 56
QrllslepplkgwleeeynaapfsvgefkrREaseGrptdrreveisrLi
s+++++k+ ++++y+a++fs+ e+k+ + r+ dr+++eisrL+
B0564.1 57 ---SSKRIEDKCAIVCQYSATKFSGLERKN----RTRG-DRKSTEISRLL 98
dRalrpsrlidleklcIaGkpewqirvdvevLesdGstsdaainAaslAL
++a++++ i +e++ p++q+++++ev++ dGs ++a++nA+slAL
B0564.1 99 EKAFESV--ILTEAF-----PRSQLDIFCEVIQGDGSNLAACVNATSLAL 141
adAgiP<-*
adAgiP
B0564.1 142 ADAGIP 147
RNase_PH_C: domain 1 of 1, from 150 to 215: score 48.8, E = 1.6e-12
*->gpvaavtvGlvddqdeTEelkndnseeildlDptyeEds.llsdldl
g+++a+t+G+vd++ ++ +D+t++E+ +ll ++l
B0564.1 150 GIASAATCGVVDGK-------------PI-VDLTSREETdLLPRVTL 182
vVagtedGkskrksivalqmdglGkgaglteelleealelAkeg<-*
+ ++ +d +++++++ ++ l+ ++l +++ Ak+
B0564.1 183 ATICGRD------EVILVEL-----QNRLHIDHLSTVMDAAKAT 215