hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /home/niguts/usr02/tshini/ykclst/db/Pfam_fs
Sequence file:            hmm1/seq/B0564.3
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Query:  B0564.3  CE05177   Putative membrane protein status:Confirmed SW:Q17528 protein_id:CAA97765.1

Scores for sequence family classification (score includes all domains):
Model         Description                               Score    E-value  N
--------      -----------                               -----    ------- ---
DUF289        Putative membrane protein                 847.8   3.6e-251   1
ABC2_membrane ABC-2 type transporter                      5.3        2.4   1

Parsed for domains:
Model         Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
--------      ------- ----- -----    ----- -----      -----  -------
ABC2_membrane   1/1     125   142 ..     1    18 [.     5.3      2.4
DUF289          1/1       1   384 [.     1   404 []   847.8 3.6e-251

Alignments of top-scoring domains:
ABC2_membrane: domain 1 of 1, from 125 to 142: score 5.3, E = 2.4
                   *->lrslfryreLilqLlkrd<-*
                      +r++ ry+eL+  L+ rd
     B0564.3   125    RRNIMRYCELVQILVFRD    142

DUF289: domain 1 of 1, from 1 to 384: score 847.8, E = 3.6e-251
                   *->MTisYnldVstssiwtFfkLllRWKGSiWKavwkELivWlflYyiIF
                      MTi+Y+++++ts++wtFf Ll++WKGSiWKav++E i++l++Y+iI
     B0564.3     1    MTINYHKEIMTSHPWTFFLLLFKWKGSIWKAVYMETIIFLICYGII- 46

                   saIYRfaLsksqwdgyqeiFeklvryfdsrldytIPLtFMLGFFVttVvr
                   s+IY++a+ +s     q++Fe+lvryfd+rl+y IPL+F+LGFFVttVv+
     B0564.3    47 SVIYKTAMGESS----QRTFESLVRYFDKRLSY-IPLEFVLGFFVTTVVN 91

                   RWwkiFdniGwIDniAlavaayirGkdeeaRiiRRnIiRYlVLsQvLvFR
                   RW+k++++iG+IDn++l++ +yirG++e+aRi+RRnI+RY++L Q+LvFR
     B0564.3    92 RWTKLYQTIGFIDNVGLMANCYIRGATEKARIYRRNIMRYCELVQILVFR 141

                   DISmkVRkRFPTldtlVaAGlMteeEldklsesikskyyv..gdkYWvPI
                   D+Sm++R+RFPT++t+VaAG+M+++El+++ +s+++ky+++ g+kYW+P
     B0564.3   142 DMSMRTRRRFPTMETVVAAGFMNKHELELY-NSYDTKYNSklGTKYWIPA 190

                   nWafsLlQyearkeGlIdsdylynvlwdeIkeFRtglalLsnyDWVPIPL
                   nWa++++ y+ark+G+I+sdy+  ++ +eI+++Rt++++++nyDWVP+PL
     B0564.3   191 NWALCMT-YKARKDGYIESDYFKAQMEGEIRTWRTNIEWVCNYDWVPLPL 239

                   vYPQVVfLAVRlYFfvCLfgRQfldsddndnktenyIDlyfPVPFimTil
                   +YPQ+V+LAV lYF+v +++RQ +++++++  +e  +D+yfP   +mT+l
     B0564.3   240 MYPQLVCLAVNLYFLVSIIARQLVIEKHKM-VDE--VDVYFP---VMTFL 283

                   QFIFyvGWmKVAEvLLNPlGEDDDDFEcNyiIDRNLavGlaIVDtlWvkE
                   QFIFy+GW+KV +v+LNP+GEDDDDFE+N++IDRN+++Gl+I+D+
     B0564.3   284 QFIFYMGWLKVIDVMLNPFGEDDDDFETNALIDRNITMGLMIADN----- 328

                   nqydrhPelekDvFwdedaePlYstsesFakipnnplvGSaanvklsend
                      + +Pel kD+F+de  +Pl++++es ++ipn++++GS+++v l++++
     B0564.3   329 --PMSTPELRKDPFYDEVDVPLLYSEES-SNIPNHHYHGSVSEVRLEQKG 375

                   veEvkmvph<-*
                   +++v+m+ph
     B0564.3   376 NAPVMMMPH    384

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