Motif confirmation by HMMer
hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file: /home/niguts/usr02/tshini/ykclst/db/Pfam_fs
Sequence file: hmm1/seq/C01B10.1
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Query: C01B10.1 CE23511 locus:drh-2 status:Partially_confirmed TR:Q17545 protein_id:AAD47117.1
Scores for sequence family classification (score includes all domains):
Model Description Score E-value N
-------- ----------- ----- ------- ---
helicase_C Helicase conserved C-terminal domain 70.9 1.1e-18 1
DEAD DEAD/DEAH box helicase 34.7 1.1e-09 2
zf-CSL CSL zinc finger 7.9 0.74 1
Enterotoxin_B Heat-labile enterotoxin beta chain 4.4 3.6 1
SCP SCP-like extracellular protein 4.4 5.1 1
DUF710 Family of unknown function (DUF710) 4.0 4.2 1
GSPII_E Type II/IV secretion system protein 3.7 2.6 1
Parsed for domains:
Model Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
GSPII_E 1/1 81 92 .. 153 164 .. 3.7 2.6
DEAD 1/2 53 119 .. 1 61 [. 34.6 1.1e-09
Enterotoxin_B 1/1 160 172 .. 1 13 [. 4.4 3.6
DUF710 1/1 293 323 .. 81 112 .] 4.0 4.2
DEAD 2/2 309 342 .. 177 207 .] -0.0 51
zf-CSL 1/1 556 567 .. 61 72 .] 7.9 0.74
helicase_C 1/1 502 583 .. 1 72 [] 70.9 1.1e-18
SCP 1/1 670 688 .. 146 163 .] 4.4 5.1
Alignments of top-scoring domains:
GSPII_E: domain 1 of 1, from 81 to 92: score 3.7, E = 2.6
*->LVTGPTGSGKTt<-*
+VT PTGSGKT+
C01B10.1 81 IVTAPTGSGKTV 92
DEAD: domain 1 of 2, from 53 to 119: score 34.6, E = 1.1e-09
*->kalkklgfekptpiQaeaipailegrDvlvqApTGSGKTlAfllPil
++++ + + ++ +Q+e +l+g++ +v ApTGSGKT++++ i
C01B10.1 53 QRIHIQRQFCLRNYQEELCQVALQGKNTIVTAPTGSGKTVIAANIIK 99
eallkg......pqalvlaP<-*
e++ ++++++++++al ++P
C01B10.1 100 EHFESRssegkrFKALFMTP 119
Enterotoxin_B: domain 1 of 1, from 160 to 172: score 4.4, E = 3.6
*->aPqniteLCaEYh<-*
+Pq i +LC E +
C01B10.1 160 TPQMIVNLCNEHR 172
DUF710: domain 1 of 1, from 293 to 323: score 4.0, E = 4.2
*->takeesalaerlrelaqrlEkalakksrkeee<-*
++ ++ +++rl+++ q++E++ ++ k+e
C01B10.1 293 NDGPIEMFTKRLKQMMQEVEDLI-RTTLKNEP 323
DEAD: domain 2 of 2, from 309 to 342: score -0.0, E = 51
*->neverlaklflknpvevs..vkse.ptplrikqk<-*
+eve+l++ lkn +v+ ++++ ++ + r++ +
C01B10.1 309 QEVEDLIRTTLKNEPTVKyeIPPTdKEHNRYENW 342
zf-CSL: domain 1 of 1, from 556 to 567: score 7.9, E = 0.74
*->psCSLiikViyd<-*
p+CSL+ik +y+
C01B10.1 556 PECSLVIKYNYA 567
helicase_C: domain 1 of 1, from 502 to 583: score 70.9, E = 1.1e-18
*->gikvarlhG...........glsqeeReeilekFrngkskvLvaTdv
gik + G+++++ ++ + + s+++++e l+ F +g++++Lv+T+v
C01B10.1 502 GIKSDWMSGqkkstassadiSASKQKQMEKLKMFADGENQILVSTSV 548
aarGiDipdvnlVInydlpwnpesyiQRiGRaGRaG<-*
a++G+Dip+++lVI y++ n + +QR+GR +Ra
C01B10.1 549 AEEGLDIPECSLVIKYNYATNETAHVQRRGR-ARAR 583
SCP: domain 1 of 1, from 670 to 688: score 4.4, E = 5.1
*->vrCgngggrd.nkvyvvCn<-*
v C n + r++n+ y+vCn
C01B10.1 670 VLCTNKDIRSkNTQYIVCN 688