Motif confirmation by HMMer
hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file: /home/niguts/usr02/tshini/ykclst/db/Pfam_fs
Sequence file: hmm1/seq/C01B9.1
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Query: C01B9.1 CE17359 status:Partially_confirmed TR:O45231 protein_id:CAB07551.1
Scores for sequence family classification (score includes all domains):
Model Description Score E-value N
-------- ----------- ----- ------- ---
FTH FTH domain 119.9 4.8e-32 5
DUF528 Protein of unknown function (DUF528) 8.0 0.68 1
F-box F-box domain 7.9 2.5 2
Rad9 Rad9 1.5 7.8 1
Parsed for domains:
Model Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
F-box 1/2 62 82 .. 1 21 [. -0.0 3.4e+02
FTH 1/5 103 158 .. 66 122 .. 9.4 0.35
FTH 2/5 363 438 .. 1 74 [. 25.2 1.7e-05
Rad9 1/1 462 492 .. 150 180 .. 1.5 7.8
DUF528 1/1 672 686 .. 39 53 .. 8.0 0.68
FTH 3/5 754 833 .. 73 153 .] 35.5 2.7e-08
FTH 4/5 1005 1126 .. 1 116 [. 20.5 0.00032
F-box 2/2 1243 1295 .. 1 46 [] 10.0 0.7
FTH 5/5 1396 1545 .. 1 153 [] 52.6 6e-13
Alignments of top-scoring domains:
F-box: domain 1 of 2, from 62 to 82: score -0.0, E = 3.4e+02
*->fslldLPdellleIlsrLdpk<-*
+l + P++ +++Ils Ld k
C01B9.1 62 VRLFETPSDPIEKILSDLDVK 82
FTH: domain 1 of 5, from 103 to 158: score 9.4, E = 0.35
*->veLeQWKnAKslkiessvvssfpIEhLfHFeeFditldsfsveDAiK
ve++ WK+ + l i s+++ p++ ++H++ + ++ s+ +D +
C01B9.1 103 VESDNWKKVRALYINSFYLAG-PVQQISHLSTASCFFNSINFDDLVF 148
IRDiLlksst<-*
+++ +l ++
C01B9.1 149 LKNHFLDAPH 158
FTH: domain 2 of 5, from 363 to 438: score 25.2, E = 1.7e-05
*->rekivesleevLks..lkkclhVkkislsgfsfsevasILpyFdagt
+ ++++ ++++ ++++ k ++ +++++ + ++ + s+L++F++g
C01B9.1 363 HMEFFNVFDKFVQPnsIKALVFSVNFKFHPLAINYITSVLSFFQPGP 409
LeeIelkssssseiddferiveLeQWKnA<-*
L++I l++ +e iv+LeQW +A
C01B9.1 410 LQSIMLDMDKRTTAMNLESIVRLEQWEQA 438
Rad9: domain 1 of 1, from 462 to 492: score 1.5, E = 7.8
*->vkktyklSyedcriLeavfdkSdiertlrak<-*
+++ + +S+ed L+ f Sdi++++ +k
C01B9.1 462 KIIAHPISFEDLTFLKEHFITSDIPQMFEIK 492
DUF528: domain 1 of 1, from 672 to 686: score 8.0, E = 0.68
*->peFdDDParsgEkiL<-*
p+ dDDP+ s+E iL
C01B9.1 672 PNRDDDPNNSNETIL 686
FTH: domain 3 of 5, from 754 to 833: score 35.5, E = 2.7e-08
*->nAKslkiessvvssfpIEhLfHFeeFditldsfsveDAiKIRDiLlk
nAK++k es+ +s pI+ L+HF++++ tl++ s++D +++ +l+
C01B9.1 754 NAKEFKAESFQLSV-PIKLLLHFSNVSATLQTVSIQDLNILKEHFLN 799
sstFescti.Fe.sdvfefsnsnpieiarvFd.Pdye<-*
s+ +++i+ + s+ +++n ++++++F+ Pd+
C01B9.1 800 SPIKLKFIInDTlSKN---EDVNVTNLLEMFGaPDRI 833
FTH: domain 4 of 5, from 1005 to 1126: score 20.5, E = 0.00032
*->rekivesleevLkslkkclhVkkislsgfsf...sevasILpyFdag
++k++++l+e Lk + ++l k +++ ++ + + +as+L+ +d+
C01B9.1 1005 DKKVLQALVEALKERQNKLRIKYLEVYFWKRpliELAASLLSWCDP- 1050
tLeeIel......kssssseiddferiveLeQWKnAKslkiessvvssfp
+ I++ + + + e + +e +v+LeQWK + + s v+ +
C01B9.1 1051 -IDLIRIvleapfFKGIVIEPEACELLVNLEQWKSVRQMMCPSLVFPT-A 1098
IEhLfHFeeFditldsfsveDAiKIRDi<-*
+ HF+ +t++++s e ++++
C01B9.1 1099 LSSFEHFSAANFTVPTISLEQLNSLKKV 1126
F-box: domain 2 of 2, from 1243 to 1295: score 10.0, E = 0.7
*->fslldLPde.....llleIlsrLdpkdllrlslVSkrwrslvdsl.l
++++ L + + + ++++Il+ + + ++ +l+ VSk r++vd+ ++
C01B9.1 1243 PPFDMLRLVtwfplIMKNILNDCAFVSVEVLRNVSKDIRQFVDRNrR 1289
wf.kll<-*
+ + +
C01B9.1 1290 NSiFQT 1295
FTH: domain 5 of 5, from 1396 to 1545: score 52.6, E = 6e-13
*->rekivesleevLkslkkclhVkkislsgfsfsevasILpyFdagtLe
+ki l + L+s +++ ++ l+ + se++ +L +Fdag+L+
C01B9.1 1396 VKKI--LLPNALRS--HKFQLVNLDLTVRNESEILELLECFDAGKLK 1438
eIel.....kssssseiddferiveLeQWKnAKslkiessvvssf...pI
+ l+ ++k+ +++ +++++ri+e+++W+n +++ + ++v++ ++ ++
C01B9.1 1439 CLILefarkKEEETGGTIEINRIAEMDHWRNLEEFAVVDYVINADplnFN 1488
EhLfHFeeFditldsfsveDAiKIRDiLlksstFesctiFesdvfefsns
+ + HF+ + ++l++f+v++ + +++ l ss ++++ +n+
C01B9.1 1489 QLFGHFKTLNVCLQNFTVDNLLFMKQKSLASSLYLHFIC--------ENF 1530
npieiarvFd.Pdye<-*
++ ++ ++ ++P e
C01B9.1 1531 ELENLYELIGrPLLE 1545