Motif confirmation by HMMer
hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file: /home/niguts/usr02/tshini/ykclst/db/Pfam_fs
Sequence file: hmm1/seq/C01C4.3a
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Query: C01C4.3a CE30845 status:Partially_confirmed TN:AAM51507 protein_id:AAM51507.1
Scores for sequence family classification (score includes all domains):
Model Description Score E-value N
-------- ----------- ----- ------- ---
pkinase Protein kinase domain 119.7 4.5e-32 1
gln-synt Glutamine synthetase, catalytic domain 4.8 3 1
Parsed for domains:
Model Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
gln-synt 1/1 204 227 .. 1 25 [. 4.8 3
pkinase 1/1 126 391 .. 1 292 [. 119.7 4.5e-32
Alignments of top-scoring domains:
gln-synt: domain 1 of 1, from 204 to 227: score 4.8, E = 3
*->erdPRsilkralarlaelGytDtpy<-*
e +PR+ l++a++ ++G++ +++
C01C4.3a 204 EFCPRASLREAVEATNQAGIG-EAN 227
pkinase: domain 1 of 1, from 126 to 391: score 119.7, E = 4.5e-32
*->yelleklGeGsfGkVykakhkdktgkiVAvKilkkekesikekrflr
y++ ++lG G fG +++a+hk ++++ A+K ++ + +++++ +f r
C01C4.3a 126 YTVNKQLGTGRFGFIKLAEHK-QSKQRIAIKFFP-RPQTKQA-DFVR 169
EiqilkrLs.HpNIv.rligvfed.tddhlylvmEymegGdLfdylrrng
E Ls+H NI++++ g+f+ ++d+ + +v+E+++ +L++ + + +
C01C4.3a 170 EYNYSFFLSpHQNIIdTYEGMFQSsDDTAYFFVQEFCPRASLREAVEATN 219
.gplsekeakkialQilrGleYLHsngivHRDLKpeNILlden..dgtvK
+ ++e kk++ +l+++e++H+++ vHR LK+eNIL+ + +++ +vK
C01C4.3a 220 qAGIGEANTKKVFAAVLSAIEFMHDENLVHRNLKAENILIFDAndYSKVK 269
iaDFGLArllesssklttfvGTpwYmmAPEvi..leg..rgysskvDvWS
++DFGL r++++ +k+ +v +Y A E+++++ +++ + D+W+
C01C4.3a 270 VTDFGLTRKVDTTVKYLEYV--NNYH-AAELCdtVVNekLVVNKSTDIWA 316
lGviLyElltggplfpgadlpaftggdevdqliif.vlklPfsdelpktr
lG+i+++ + g+++++ + +++ P+++
C01C4.3a 317 LGIIFFYCMKGKFPWQ-----------------KAsIMCKPYWE------ 343
idpleelfriikrpglrlplpsncSeelkdLlkkcLnkDPskRpGsatak
+e++++ ++ +++++ +Se +++L kk L++ ++R+ tak
C01C4.3a 344 ---WEQWLKRKNP--ALPKKFNPFSEKALKLFKKSLTPRFKDRW---TAK 385
eilnhp<-*
++ + +
C01C4.3a 386 DMRKCL 391