Motif confirmation by HMMer
hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file: /home/niguts/usr02/tshini/ykclst/db/Pfam_fs
Sequence file: hmm1/seq/C01G6.8b
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Query: C01G6.8b CE24774 locus:cam-1 protein tyrosine kinase receptor status:Confirmed TR:Q17576 protein_id:CAA84639.2
Scores for sequence family classification (score includes all domains):
Model Description Score E-value N
-------- ----------- ----- ------- ---
pkinase Protein kinase domain 219.4 5.2e-62 1
kringle Kringle domain 61.0 4.6e-17 1
ig Immunoglobulin domain 36.7 1.7e-08 1
Rhabdo_glycop Rhabdovirus spike glycoprotein 6.8 0.23 1
Fz Fz domain 4.0 2.2 1
carb_anhydrase Eukaryotic-type carbonic anhydrase 3.2 7.2 1
Parsed for domains:
Model Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
ig 1/1 26 86 .. 1 50 [] 36.7 1.7e-08
Fz 1/1 169 200 .. 1 33 [. 4.0 2.2
carb_anhydrase 1/1 386 403 .. 1 26 [. 3.2 7.2
kringle 1/1 328 403 .. 1 85 [] 61.0 4.6e-17
Rhabdo_glycop 1/1 441 482 .. 500 546 .] 6.8 0.23
pkinase 1/1 564 833 .. 1 294 [] 219.4 5.2e-62
Alignments of top-scoring domains:
ig: domain 1 of 1, from 26 to 86: score 36.7, E = 1.7e-08
*->GesvtLtCsvsgfgpp.p.vtWlrngk.le..........tsslslt
G+ v++ C++ g p+ ++ Wl+n++++e++++ + +++ +s++l
C01G6.8b 26 GDEVRFKCEAL--GTPpLkFIWLKNNGpVEktkrvkirdkENSSRLV 70
i.svtpeDsgGtYtCvv<-*
i+ + Ds G Y C v
C01G6.8b 71 ItQLDVLDS-GYYQCIV 86
Fz: domain 1 of 1, from 169 to 200: score 4.0, E = 2.2
*->sgssgestgrCepiteiplCkglgYnltlmPNl<-*
+ + + g C++++ ++ C+ ++ n ++m+++
C01G6.8b 169 LDGIKYRVGDCVQYR-GEACRQYLSNKFVMMTN 200
carb_anhydrase: domain 1 of 1, from 386 to 403: score 3.2, E = 7.2
*->WgYgehngpehsnnahvlWhklyPiA<-*
W+Y++ +g e+ +++P +
C01G6.8b 386 WCYSKPMGQEE--------YCDVPQC 403
kringle: domain 1 of 1, from 328 to 403: score 61.0, E = 4.6e-17
*->CyqGnGesYRGtvstTeSGapCQaWdsqtphrHskYtpenfpakgLg
Cy + G +Y Gtv++T SG++C +W ++ r + + ++fp
C01G6.8b 328 CYVNSGTQYEGTVAQTSSGKQCAPW-IDSTSR-DF-NVHRFPELMNS 371
eGkHNYCRNPDGderGPWCYTltdprvrwEYCsdiprC<-*
NYCRNP G PWCY p ++ EYC d+p+C
C01G6.8b 372 K---NYCRNPGGKKSRPWCYS--KPMGQEEYC-DVPQC 403
Rhabdo_glycop: domain 1 of 1, from 441 to 482: score 6.8, E = 0.23
*->lllsamvvvalvLllllircCrvlsrpprprakqpipmshvsrsrlr
+ l +++v + +Lllll++c + ++ ++++q + +++ s +
C01G6.8b 441 VALVGGGVFFSLLLLLLFCCACCCR---AKKKSQKTRHQNAHCS--S 482
<-*
C01G6.8b - -
pkinase: domain 1 of 1, from 564 to 833: score 219.4, E = 5.2e-62
*->yelleklGeGsfGkVykakhkd....ktgkiVAvKilkkekesikek
+ + ek+GeG fG+V +++ + + + VAvK+ + ++++
C01G6.8b 564 LSVREKIGEGQFGVVHSGIYTSglfaPEPMAVAVKKCR--HDATNAE 608
..rflrEiqilkrLsHpNIvrligvfedtddhlylvmEymegGdLfdylr
+ ++ Ei+ ++++HpN+++ligv++ d++l v+Eym +GdL+++l+
C01G6.8b 609 raQLEQEIRAVATFDHPNVIKLIGVCY-MDNSLLAVFEYMVHGDLHELLK 657
rng.......gplsekea..kkialQilrGleYLHsngivHRDLKpeNIL
+ ++ +++ g ++e a+ + ia+Qi+ G+eYL s+++vHRDL+++N+L
C01G6.8b 658 VRVppadhdmGGITEANAefLYIATQIALGMEYLASMSFVHRDLATRNCL 707
ldendgtvKiaDFGLArlle..sssklttfvGTpwYmmAPEvilegrgys
+ + t+KiaDFGL r ++++++k+ ++ p+++m+ E +e+ +s
C01G6.8b 708 VGDT-RTIKIADFGLMRTSYgsDYYKMLHRSWMPVRWMSKEA-IEQGRFS 755
skvDvWSlGviLyElltggplfpgadlpaftggdevdqliifvlklPfsd
++DvWS+Gv+L+E+ + g ++P+++
C01G6.8b 756 EASDVWSFGVTLWEIWSFG-------------------------RQPYEG 780
elpktridpleelfriikrpglrlplpsncSeelkdLlkkcLnkDPskRp
+++ +++ + +++l++p+nc+ + ++L+ +c++ + ++Rp
C01G6.8b 781 -------ASNQQVIELVAN-RHLLECPHNCPTNIYSLMVECWHENIERRP 822
Gsatakeilnhpwf<-*
t+ ei ++
C01G6.8b 823 ---TFSEIRSRLQS 833