hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /home/niguts/usr02/tshini/ykclst/db/Pfam_fs
Sequence file:            hmm1/seq/C01H6.5a
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Query:  C01H6.5a  CE24775  locus:nhr-23 nuclear hormone receptor status:Confirmed SW:Q17584 protein_id:CAA95782.2

Scores for sequence family classification (score includes all domains):
Model       Description                                 Score    E-value  N
--------    -----------                                 -----    ------- ---
zf-C4       Zinc finger, C4 type (two domains)          182.6    1.3e-53   1
hormone_rec Ligand-binding domain of nuclear hormone     71.4    4.2e-21   1

Parsed for domains:
Model       Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
--------    ------- ----- -----    ----- -----      -----  -------
zf-C4         1/1     161   236 ..     1    77 []   182.6  1.3e-53
hormone_rec   1/1     395   583 ..     1   203 []    71.4  4.2e-21

Alignments of top-scoring domains:
zf-C4: domain 1 of 1, from 161 to 236: score 182.6, E = 1.3e-53
                   *->elCkVCGDkASGyHYGvlTCEGCKGFFrRsiqknlviYsCkrnkdCv
                      ++CkVCGDk+SG HYGv+TCEGCKGFFrRs+    + Y+C+r+k+Cv
    C01H6.5a   161    IPCKVCGDKSSGVHYGVITCEGCKGFFRRSQSSIVN-YQCPRQKNCV 206

                   IdKrnRnrCQyCRLkKCLeVGMskeaVrfg<-*
                   +d+ nRnrCQyCRLkKC+e GMs++aV+fg
    C01H6.5a   207 VDRVNRNRCQYCRLKKCIELGMSRDAVKFG    236

hormone_rec: domain 1 of 1, from 395 to 583: score 71.4, E = 4.2e-21
                   *->frqlllivewaKslPfFkeLsleDQiiLLkhswlelllLrlayrsyk
                         +++i+e+aKs+++F++L++e+Qi LLk+s++el l+  a++++
    C01H6.5a   395    NPLIQAIIEFAKSIDGFMNLPQETQIQLLKGSVFELSLVFAAMYYNV 441

                   ekkataDgsdtllfpdGtdidrdsl...gsselirrifelliklrvnvla
                   +             +   +  + ++     +  ++ i e  ++l+
    C01H6.5a   442 DAQ---------AVCGERYSVPFACliaEDDAEMQLIVEVNNTLQ----- 477

                   plieLkldeeEyalLkAIvLfnP...sdvpgLsesarelveklqekylsa
                    +++L+ ++ E+alL A +++ + ++s   g+ + a     +  e++ +a
    C01H6.5a   478 EIVHLQPHQSELALLAAGLILEQvssSHGIGILDTA---TIATAETLKNA 524

                   LlqycllnypdslssdgpsRFakLLlllpvlrslssdlkehlfflkrlfn
                   L+q ++ + +     +  +   ++  + + +r+++++++e l  +++  +
    C01H6.5a   525 LYQSVMPRIG-----CMEDTIHRIQDVETRIRQTARLHQEALQNFRMSDP 569

                   lpkvpp..Llkell<-*
                     + + + L+kel+
    C01H6.5a   570 TSSEKLpaLYKELF    583

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