Motif confirmation by HMMer
hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file: /home/niguts/usr02/tshini/ykclst/db/Pfam_fs
Sequence file: hmm1/seq/C02F5.3
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Query: C02F5.3 CE00039 GTP-binding protein status:Partially_confirmed SW:P34280 protein_id:AAA27918.1
Scores for sequence family classification (score includes all domains):
Model Description Score E-value N
-------- ----------- ----- ------- ---
GTP1_OBG GTP1/OBG family 462.8 2.8e-135 1
TGS TGS domain 107.8 1.2e-28 1
TM2 TM2 domain 66.5 1.6e-16 1
MMR_HSR1 GTPase of unknown function 4.4 3.9 1
TSPN Thrombospondin N-terminal -like domain 3.1 9.1 1
MAGE MAGE family 2.7 9.9 1
DUF282 Caenorhabditis protein of unknown function, 2.2 3.6 1
FeoB Ferrous iron transport protein B 1.5 7.3 1
Parsed for domains:
Model Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
FeoB 1/1 67 79 .. 1 13 [. 1.5 7.3
MMR_HSR1 1/1 64 79 .. 133 148 .. 4.4 3.9
TSPN 1/1 107 129 .. 1 23 [. 3.1 9.1
GTP1_OBG 1/1 1 267 [. 1 292 [] 462.8 2.8e-135
MAGE 1/1 281 293 .. 248 260 .] 2.7 9.9
TGS 1/1 286 365 .. 1 77 [] 107.8 1.2e-28
DUF282 1/1 474 484 .. 449 459 .] 2.2 3.6
TM2 1/1 505 554 .. 1 52 [] 66.5 1.6e-16
Alignments of top-scoring domains:
FeoB: domain 1 of 1, from 67 to 79: score 1.5, E = 7.3
*->LvGNPNVGKSTLF<-*
+vG P VGKSTL+
C02F5.3 67 MVGFPSVGKSTLL 79
MMR_HSR1: domain 1 of 1, from 64 to 79: score 4.4, E = 3.9
*->rVgviGyPNVGKSSLI<-*
rV+++G+P VGKS+L+
C02F5.3 64 RVAMVGFPSVGKSTLL 79
TSPN: domain 1 of 1, from 107 to 129: score 3.1, E = 9.1
*->gqdllqvfdLpessfsvrkavgl<-*
+ ++q++dLp + +++++++g+
C02F5.3 107 NGANIQLLDLPGIIEGASQGKGR 129
GTP1_OBG: domain 1 of 1, from 1 to 267: score 462.8, E = 2.8e-135
*->gGngekifrrEkempktgPnggtgghgGdlkakvdkllrtLldfryk
+G++eki ++E e+ +t++n++t++h+G+lkak++k++++Ll+++ k
C02F5.3 1 MGILEKIAEIEHEISRTQKNKATEYHLGLLKAKLAKYRQQLLEPTGK 47
khgkaekGkeGfdvnksGdagvdligfvpvGtsvldseRSIltstlsDla
++ k+ eGfdv+ksGda+v+++gf++vG+s+l+s +tst+s++a
C02F5.3 48 GGAKG----EGFDVMKSGDARVAMVGFPSVGKSTLLSS---MTSTHSEAA 90
aygfttLtavgGvggygnahakiqildlPgiieggsdGkgRrrqvlevkr
+y+fttLt+++Gv++y++ a+iq+ldlPgiieg+s+GkgR+rqv++v+
C02F5.3 91 GYEFTTLTCIPGVISYNG--ANIQLLDLPGIIEGASQGKGRGRQVISVAK 138
tADVglvglPnagkStliraiseakpkiagyrlttlvPNLgvvkkdtRKK
tAD++l++l++ ++ ++ ++e++++ +g+rl++++PN++v+ k+
C02F5.3 139 TADLILMMLDAGKS-DQQKMLLERELEAVGIRLNKKPPNIYVKQKKV--- 184
IQggifvmAdvPGLiegAsegiglglsFlrHIeraevLihvdDatvdDfI
gg++++++vP L+++ +++i +l++++ I +a+v++++d +tvd+fI
C02F5.3 185 --GGVKFTNTVP-LTHCNEKLIMTVLHEYK-IFNADVIFRED-CTVDEFI 229
dvpeenlrvyipeLyvynllkKIDqvsLeekprlvNLvrnpidvp<-*
dv+ +n rvy+++Lyvyn K Dq+s+ee +rl +r p+ v+
C02F5.3 230 DVIQGN-RVYMTCLYVYN---KVDQISIEEIDRL---ARMPHHVV 267
MAGE: domain 1 of 1, from 281 to 293: score 2.7, E = 9.9
*->EeIWEvLsvlGVY<-*
E++WE L ++VY
C02F5.3 281 EKMWEYLALVRVY 293
TGS: domain 1 of 1, from 286 to 365: score 107.8, E = 1.2e-28
*->fldlirvytKPdGkvpdf.eP..lilpkGsTTpeDfAyaIHtdlgkk
+l l+rvytK++G pd ++ +++il+ G+T +e++++a+H++++ +
C02F5.3 286 YLALVRVYTKKPGNAPDLgPEdgIILRGGAT-IEHCCHALHRSIAAQ 331
figAkVnGkSvKh.pqrVgLdhvLedgDvVeIvt<-*
++A+V+G+S+K++pqrVgL h+L ++Dv++I
C02F5.3 332 LRYAIVWGTSTKFsPQRVGLHHKLDHEDVIQIMR 365
DUF282: domain 1 of 1, from 474 to 484: score 2.2, E = 3.6
*->qelssltCrni<-*
+e++++ Cr++
C02F5.3 474 VEFTNVKCRVL 484
TM2: domain 1 of 1, from 505 to 554: score 66.5, E = 1.6e-16
*->tgykklialllllflGifGlhRFYlGqigkGilfLftfwlgilgigw
+g+++l++ll+++flG++ ++RF+lG+ ++++++L+t lg++gi+w
C02F5.3 505 NGHYFLTTLLYSIFLGVVAVDRFCLGYSAMAVGKLMT--LGGFGIWW 549
lidli<-*
++d++
C02F5.3 550 IVDIF 554