Motif confirmation by HMMer
hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file: /home/niguts/usr02/tshini/ykclst/db/Pfam_fs
Sequence file: hmm1/seq/C03B1.13
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Query: C03B1.13 CE28529 status:Partially_confirmed TR:Q95QY6 protein_id:AAK68681.2
Scores for sequence family classification (score includes all domains):
Model Description Score E-value N
-------- ----------- ----- ------- ---
sugar_tr Sugar (and other) transporter 72.1 5.1e-20 2
AmoA Putative ammonia monooxygenase 4.3 3.1 1
OAD_gamma Oxaloacetate decarboxylase, gamma chain 3.5 8.4 2
Parsed for domains:
Model Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
OAD_gamma 1/2 29 47 .. 1 23 [. 3.0 12
sugar_tr 1/2 60 94 .. 117 151 .. 11.3 0.016
AmoA 1/1 105 124 .. 321 340 .] 4.3 3.1
OAD_gamma 2/2 377 391 .. 79 93 .] 1.9 26
sugar_tr 2/2 255 404 .. 319 488 .] 65.4 4.3e-18
Alignments of top-scoring domains:
OAD_gamma: domain 1 of 2, from 29 to 47: score 3.0, E = 12
*->LlgegitlmvlGMGiVflfLiiL<-*
+ +++t+ G+G+ fl+L++L
C03B1.13 29 MC-IAATI---GVGVHFLALSFL 47
sugar_tr: domain 1 of 2, from 60 to 94: score 11.3, E = 0.016
*->vGRvlvGlgvGgasvlvPmYisEiAPkalRGalgs<-*
+GR+ +Gl +G +l P+Yi Ei+P++ R + ++
C03B1.13 60 IGRLMIGLQAGSSLCLLPLYIIEISPAHYRSFFIM 94
AmoA: domain 1 of 1, from 105 to 124: score 4.3, E = 3.1
*->lLlvLlllpplirylsklrg<-*
lL+vL + pp +yls+ ++
C03B1.13 105 LLFVLIITPPTPNYLSHFHP 124
OAD_gamma: domain 2 of 2, from 377 to 391: score 1.9, E = 26
*->AaIvAAihhhrrqqa<-*
+a+vAAi+ ++++ +
C03B1.13 377 PALVAAILIYLYLPE 391
sugar_tr: domain 2 of 2, from 255 to 404: score 65.4, E = 4.3e-18
*->ivgvvNfvfTfvaLiflvDrfGRRpllllGaagmaicflilgasigv
++g+v f++ +++ i+l DrfGRR+l+l+G++g +++ +
C03B1.13 255 GLGLVLFFASLFG-IYLADRFGRRKLVLVGLFGTCVANIGA------ 294
allllnkpkdpsskaagivaivfillfiafFalgwGpipwvilsElFPtk
+ + +nk iv+++f++ +f+++g G+ +w+++sEl ++
C03B1.13 295 VVFTTNK---------VIVSLCFAATK-TFIGIGCGGPAWFLTSELVDPE 334
vRskalalataanwlanfiigflfpyitgaiglalggyvflvfagllvlf
+ l+t+ ++i f++ ++ + g g++ +++ag ++++
C03B1.13 335 YAWIFQPLSTGILLSTTMIETFFYLTVDNLVG---GYSLLILAAGPALVA 381
ilfvfffvPETkGrtLEeieelf<-*
+ +++ +PETkGr+ Eei+ ++
C03B1.13 382 AILIYLYLPETKGRSSEEIQNML 404