Motif confirmation by HMMer
hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file: /home/niguts/usr02/tshini/ykclst/db/Pfam_fs
Sequence file: hmm1/seq/C04E12.4
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Query: C04E12.4 CE30721 status:Partially_confirmed TR:O76677 protein_id:AAC27089.3
Scores for sequence family classification (score includes all domains):
Model Description Score E-value N
-------- ----------- ----- ------- ---
PNGase PNGase-like conserved region 405.4 9.8e-119 3
IncA IncA protein 2.7 8 1
Parsed for domains:
Model Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
PNGase 1/3 76 144 .. 1 72 [] 128.8 8.7e-37
PNGase 2/3 252 321 .. 1 72 [] 133.6 3.2e-38
IncA 1/1 467 480 .. 263 276 .] 2.7 8
PNGase 3/3 449 520 .. 1 72 [] 157.7 2.3e-45
Alignments of top-scoring domains:
PNGase: domain 1 of 3, from 76 to 144: score 128.8, E = 8.7e-37
*->IqLePksgeNYvKFtYDIIsNtYSHtnedGSpvkPyvvsNiERVvDr
I+Le++s+++Yv+F+YD Is++YSH n++GS+++P+vv+N+ER++++
C04E12.4 76 IHLENDSQNRYVEFQYDPISGKYSHVNKNGSRINPFVVKNVERHSEK 122
rlNeVYLhkkdpekkriGnIsWaFd<-*
+ ++YLhkkd++++ G+I+W+F+
C04E12.4 123 PY-DAYLHKKDKNEE--GSIYWKFN 144
PNGase: domain 2 of 3, from 252 to 321: score 133.6, E = 3.2e-38
*->IqLePksgeNYvKFtYDIIsNtYSHtnedGSpvkPyvvsNiERVvDr
Iq +P+sg+NYvKFtY I +NtYSH+n dGSpv Py+v+ iER vDr
C04E12.4 252 IQFNPNSGDNYVKFTYSILNNTYSHDNIDGSPVAPYFVDKIERLVDR 298
rlNeVYLhkkdpekkriGnIsWaFd<-*
++NeVYL++++p + +n++WaF+
C04E12.4 299 TNNEVYLRQEFPGVF--SNMYWAFN 321
IncA: domain 1 of 1, from 467 to 480: score 2.7, E = 8
*->IrkaLSfsrkdaSa<-*
I + S+s+ d S+
C04E12.4 467 ISNTYSQSYEDGSP 480
PNGase: domain 3 of 3, from 449 to 520: score 157.7, E = 2.3e-45
*->IqLePksgeNYvKFtYDIIsNtYSHtnedGSpvkPyvvsNiERVvDr
IqL+P++g +Y+KFtYD+IsNtYS++ edGSpvkPy++sN+E+VvDr
C04E12.4 449 IQLKPETGRDYAKFTYDVISNTYSQSYEDGSPVKPYLASNVEHVVDR 495
rlNeVYLhkkdpekkriGnIsWaFd<-*
rlN++Y+h+k+p++kriG+I+W+Fd
C04E12.4 496 RLNVAYIHMKEPINKRIGLINWEFD 520