Motif confirmation by HMMer
hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file: /home/niguts/usr02/tshini/ykclst/db/Pfam_fs
Sequence file: hmm1/seq/C04F12.3
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Query: C04F12.3 CE19676 Ank repeat status:Partially_confirmed TR:Q9U3S0 protein_id:CAB62796.1
Scores for sequence family classification (score includes all domains):
Model Description Score E-value N
-------- ----------- ----- ------- ---
ank Ankyrin repeat 128.3 9.2e-35 6
death Death domain 68.8 8.8e-19 1
MgtE_N MgtE intracellular domain 5.4 2.9 1
Herpes_alk_exo Herpesvirus alkaline exonuclease 2.2 5.7 1
Parsed for domains:
Model Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
ank 1/6 173 204 .. 1 33 [] 12.0 0.13
ank 2/6 212 244 .. 1 33 [] 35.3 2.9e-08
ank 3/6 245 281 .. 1 33 [] 6.7 4.2
ank 4/6 282 314 .. 1 33 [] 25.4 2e-05
ank 5/6 316 348 .. 1 33 [] 18.5 0.0018
ank 6/6 349 381 .. 1 33 [] 30.4 7.3e-07
MgtE_N 1/1 567 593 .. 71 97 .. 5.4 2.9
death 1/1 517 595 .. 1 86 [] 68.8 8.8e-19
Herpes_alk_exo 1/1 562 597 .] 1 41 [. 2.2 5.7
Alignments of top-scoring domains:
ank: domain 1 of 6, from 173 to 204: score 12.0, E = 0.13
*->dGnTPLHlAakrgnlevvklLlqrGAdlnaqdd<-*
+GnT H+Aak+g+ +klLl+ +++++
C04F12.3 173 EGNTVFHVAAKNGQSFSLKLLLS-VIPPDIKNE 204
ank: domain 2 of 6, from 212 to 244: score 35.3, E = 2.9e-08
*->dGnTPLHlAakrgnlevvklLlqrGAdlnaqdd<-*
+G T+LH+A++ g+++ v +L+++GA +++ d+
C04F12.3 212 HGLTALHVAIRTGDPDAVHYLMNHGAKIDISDN 244
ank: domain 3 of 6, from 245 to 281: score 6.7, E = 4.2
*->dGnTPLHlAakrgnlevvklLlq....rGAdlnaqdd<-*
+G+T+LH+ n ++ k +l++++++ d+n +
C04F12.3 245 HGSTALHYLGDAYNESIFKEILEpsrgQRFDVNQLNS 281
ank: domain 4 of 6, from 282 to 314: score 25.4, E = 2e-05
*->dGnTPLHlAakrgnlevvklLlqrGAdlnaqdd<-*
+G+ P H+A++r l+++++L+++GA ++ d
C04F12.3 282 EGFAPIHVAVRRLKLSLIEMLIEAGALIDFLDT 314
ank: domain 5 of 6, from 316 to 348: score 18.5, E = 0.0018
*->dGnTPLHlAakrgnlevvklLlqrGAdlnaqdd<-*
+ +L+ A+++++ e ++lL++rG+ +n+ d
C04F12.3 316 KKRNALMHAIEMNDFETIQLLVERGSGTNIEDE 348
ank: domain 6 of 6, from 349 to 381: score 30.4, E = 7.3e-07
*->dGnTPLHlAakrgnlevvklLlqrGAdlnaqdd<-*
G+T+L lA+k+ n+ v+ lLl++GAd+n q+
C04F12.3 349 SGETALSLAVKNVNYPVIGLLLDNGADPNRQNS 381
MgtE_N: domain 1 of 1, from 567 to 593: score 5.4, E = 2.9
*->lealsdeelaealeeLdpDDaadlLeE<-*
le+ s+++l +a+++++ DDa+ l ++
C04F12.3 567 LEDSSISRLRDAMNQMAEDDAVKLIDS 593
death: domain 1 of 1, from 517 to 595: score 68.8, E = 8.8e-19
*->relekllddpdlgrdWkrLArkLglseeeIdqiehenprdlrsptyq
++ k++dd+ + W+rLA++L+++ ++++ i+ ++ +d++spt+
C04F12.3 517 IRVAKIFDDQ---CKWQRLAQQLNCD-HMVELISICSSGDDSSPTMI 559
lLdlWeqregkneAtvgtLleaLrkmgrddavellesal<-*
lLd++eq e +++ +L++a+++m +ddav+l+ s+
C04F12.3 560 LLDQFEQLED---SSISRLRDAMNQMAEDDAVKLIDSRY 595
Herpes_alk_exo: domain 1 of 1, from 562 to 597: score 2.2, E = 5.7
*->dlkevlasltfsrhFLksppvpefiatakravkfprlRlvY<-*
d+ e+l++ + sr L+++ ++ ++ avk+++ R+vY
C04F12.3 562 DQFEQLEDSSISR--LRDAMNQMAED---DAVKLIDSRYVY 597