Motif confirmation by HMMer
hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
HMM file: /home/niguts/usr02/tshini/ykclst/db/Pfam_fs
Sequence file: hmm1/seq/C04F12.1
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
Query: C04F12.1 CE19674 status:Partially_confirmed TR:Q9XVF1 protein_id:CAB03833.1
Scores for sequence family classification (score includes all domains):
Model Description Score E-value N
-------- ----------- ----- ------- ---
Piwi Piwi domain 119.5 6.1e-32 1
gpW gpW 4.1 6.5 1
Osteopontin Osteopontin 3.6 1.6 1
Glyco_hydro_76 Glycosyl hydrolase family 76 3.6 5.4 1
Parsed for domains:
Model Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
Osteopontin 1/1 206 221 .. 319 334 .] 3.6 1.6
gpW 1/1 762 773 .. 1 12 [. 4.1 6.5
Glyco_hydro_76 1/1 764 789 .. 71 98 .. 3.6 5.4
Piwi 1/1 605 902 .. 24 341 .] 119.5 6.1e-32
Alignments of top-scoring domains:
Osteopontin: domain 1 of 1, from 206 to 221: score 3.6, E = 1.6
*->klRiSHELdSaSsEvN<-*
k+ +S EL+S sE N
C04F12.1 206 KFHVSIELNSKQSELN 221
gpW: domain 1 of 1, from 762 to 773: score 4.1, E = 6.5
*->MvrveELaAlRa<-*
Mvr eE +A+ +
C04F12.1 762 MVRNEEFQAIKQ 773
Glyco_hydro_76: domain 1 of 1, from 764 to 789: score 3.6, E = 5.4
*->YkdlHVFQAlktallaqaGddfDYmPsn<-*
++++ FQA+k+++ ++++ +++Ps+
C04F12.1 764 RNEE--FQAIKQSIMNVFNEKKAKAPSF 789
Piwi: domain 1 of 1, from 605 to 902: score 119.5, E = 6.1e-32
*->kreltelgipsQcvllktlkkkskqGgrltltNvilkanmKlGGlNy
k+++ + +++Q v l++ k++++ + t N+++k+n+K GG N
C04F12.1 605 KLQERLCEVITQQVALDKSLKRTPG--KVTANNLLMKLNLKYGGVNH 649
klniekeprckVCNemrvip.lkptliiGfDvshppaRTkfDrenggrln
k+ ++++ + ++ ++++tlii +Dv+h++ + +
C04F12.1 650 KVRVDNSISH-------LWGdTSNTLIISYDVCHSSGK---VYKKDEICD 689
npsvagvvasmdsphgtkfrgdvrlqpagqElltdlkkgiires..Lrsf
+ps +g+ + ++ f+gd+ +q ++ E +++ +r + L+ +
C04F12.1 690 EPSCVGFGFNGTA-CPEAFIGDFHYQLPRHEQVDEHLL-KLRARfmLNHY 737
ykntrkkkPkrIivYRDGvSEGqfsqvlnyEvnqikeackklsesyqe..
++++ k P+++++ RDGvSEGq+++v n+E ++ik+ ++ ++e++
C04F12.1 738 ITSRK-KYPQQVVILRDGVSEGQHKMVRNEEFQAIKQ---SIMNVFNEkk 783
qe.PkltvIvvqKrHhtRfFasdksdggskakaqNvpPGTvVDdkitspe
P+++++vv+KrH R+ +d+++ NvpP T +D +i+
C04F12.1 784 AKaPSFALLVVTKRHANRLLIKDQNGY------TNVPPLTAIDQTIVKKQ 827
yydFylcsqagrqGTvkPthYtVlyDdigeyylsadelqdLTykLCymyq
++ + +s+ ++ GT+ P + l++d + d+l + + +LC ++q
C04F12.1 828 GNEVIFVSHCPLNGTAQPIVINTLVNDGI--FKTNDQLVQFITALCCAHQ 875
rvtrpvslPaPvyYAhllAkrgrnnlk<-*
+t vslP +y+A+++Akrg+ +
C04F12.1 876 KSTNIVSLPESIYAADEYAKRGADLFQ 902