hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /home/niguts/usr02/tshini/ykclst/db/Pfam_fs
Sequence file:            hmm1/seq/C04G2.6
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Query:  C04G2.6  CE05214   S.pombe mitotic control protein like status:Partially_confirmed SW:Q17632 protein_id:CAA94677.1

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N
-------- -----------                                    -----    ------- ---
RNB      RNB-like protein                               554.2   8.9e-163   1
BSD      BSD domain                                       8.0        1.4   1
EspF     EspF protein                                     6.1        0.5   1
UCR_14kD Ubiquinol-cytochrome C reductase complex 14k     5.9          2   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
EspF       1/1     212   227 ..   170   185 .]     6.1      0.5
UCR_14kD   1/1     296   307 ..    73    84 ..     5.9        2
BSD        1/1     676   696 ..     1    21 [.     8.0      1.4
RNB        1/1     397   763 ..     1   406 []   554.2 8.9e-163

Alignments of top-scoring domains:
EspF: domain 1 of 1, from 212 to 227: score 6.1, E = 0.5
                   *->qALKDHLAAYElsKKa<-*
                      qAL D +AAYE s  +
     C04G2.6   212    QALLDQMAAYESSGNG    227

UCR_14kD: domain 1 of 1, from 296 to 307: score 5.9, E = 2
                   *->hlLPkdqWtkpe<-*
                      +lLP+dqWt+pe
     C04G2.6   296    QLLPEDQWTAPE    307

BSD: domain 1 of 1, from 676 to 696: score 8.0, E = 1.4
                   *->nefkldlkreeieaiLkedPa<-*
                      +ef+l ++  ++e+iL+e+P+
     C04G2.6   676    EEFMLLANISVAEKILEEYPD    696

RNB: domain 1 of 1, from 397 to 763: score 554.2, E = 8.9e-163
                   *->enaeakegqlvvasikrerwpitslhPlGelveiLGnigdpeieida
                      e+ae +++q++v++i+  +wp +s++PlG++v+++G++g+ e+e ++
     C04G2.6   397    EQAETLSQQRIVVAID--HWPRDSKYPLGHYVRSIGEMGSRETENEV 441

                   iLrehdipledfskvveealklepewe.paydLPateieeeelkkRrDLr
                   +L+ehdip+++fs++v+++l++e ewe++     +te+  ++   R+DLr
     C04G2.6   442 LLLEHDIPHAPFSESVLDCLPRE-EWEpD-----LTENRGPLP--RVDLR 483

                   dlliftIDpegarDiDDAlsvkkldnggqgyeLgVHIADVthyVkpgSsL
                   dl+i+++Dp g+ DiDDAl++k+++++  ++e+gVHIADVth+V+pg+++
     C04G2.6   484 DLTICSVDPLGCTDIDDALHCKQIGED--LFEVGVHIADVTHFVRPGTAI 531

                   DkEAakRgtsvYLPqkviPMLPeeLsnglCSLkpnedRlAlScemtlDss
                   D+EAa Rgt+vYL++++i+MLP++Ls +lCSL+  e+R+A+Sc++t++ss
     C04G2.6   532 DDEAALRGTTVYLCDRRIDMLPCLLSSNLCSLRGEEERYAFSCIWTMTSS 581

                   GadseitdveigkSVIrskarltYeevdeiLedpkdelvdevknidetse
                   +   +i++v+++kS I+ska+ltYe+++ei++dp      +      +++
     C04G2.6   582 A---DIQSVKYHKSLIKSKAALTYEKAQEIIDDP------K------EQN 616

                   plveslrllselakllrkkRlkrGaidldlpetkfdldedNageveviei
                   +++ +lr+l++l+k+l ++R  +Ga++l+++e++fd+d++  +++++ ++
     C04G2.6   617 DVALGLRGLMKLSKVLNARRTGNGALTLASSEVRFDMDWE--SRTPKKVM 664

                   svsieertdahslveEfMllANeaVArhlyehfipgallRrHppPslekl
                      +++++d+hs+veEfMllAN++VA+++ e+++++allRrHp P +e++
     C04G2.6   665 ---EKQHLDTHSMVEEFMLLANISVAEKILEEYPDCALLRRHPVPLKESY 711

                   eslvefltelglkkksteetaatvtskelatllkkckdrpseelletlll
                   + lve ++ ++++++++e      ++k la++l++c+d+ + ++l++ll+
     C04G2.6   712 KPLVEAAR-HRGFEIIVE------SGKGLADSLNRCVDK-KNPMLNRLLR 753

                   rslkrakYsv<-*
                   ++++r++ +
     C04G2.6   754 MLTTRCMTQA    763

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