Motif confirmation by HMMer
hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file: /home/niguts/usr02/tshini/ykclst/db/Pfam_fs
Sequence file: hmm1/seq/C04G6.1
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Query: C04G6.1 CE31290 Ser\/Thr protein kinase status:Partially_confirmed TR:Q17642 protein_id:AAA98016.3
Scores for sequence family classification (score includes all domains):
Model Description Score E-value N
-------- ----------- ----- ------- ---
pkinase Protein kinase domain 286.7 2.9e-82 1
Pur_DNA_glyco Methylpurine-DNA glycosylase (MPG) 2.6 9.4 1
Parsed for domains:
Model Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
Pur_DNA_glyco 1/1 49 57 .. 219 227 .] 2.6 9.4
pkinase 1/1 57 352 .. 1 294 [] 286.7 2.9e-82
Alignments of top-scoring domains:
Pur_DNA_glyco: domain 1 of 1, from 49 to 57: score 2.6, E = 9.4
*->RFwvtgnpw<-*
RFw+ g+p+
C04G6.1 49 RFWLEGTPY 57
pkinase: domain 1 of 1, from 57 to 352: score 286.7, E = 2.9e-82
*->yelleklGeGsfGkVykakhkdktgkiVAvKilkkekesikek...r
y e +G+G++G+V ka + ++k+VA+K+++ + + ++ +r
C04G6.1 57 YLAEENVGAGAYGVVCKAMDT-RNKKQVAIKKIP--RAFTAHTlakR 100
flrEiqilkrLsHpNIvrligvfed...tddhlylvmEymegGdLfdylr
lrE++il++L H+NI+ ++++f+ ++ +++ +ylvm++me dL+++l+
C04G6.1 101 SLREVRILRELLHENIIAVLDMFTAegaHGKDIYLVMDLMET-DLHQILH 149
rnggplsekeakkialQilrGleYLHsngivHRDLKpeNILldendgtvK
++ + + e++ + +++Q+lrGl+YLHs gi+HRDLKp+N+Ll+ + ++
C04G6.1 150 SRQTLM-EQHFQYFFYQLLRGLKYLHSAGIIHRDLKPSNLLLNGD-CLLR 197
iaDFGLArlle..........sssklttfvGTpwYmmAPEvileg.rgys
iaDFG+Ar + + ++ +++ + ++++t++v T+wY+ APE+ l++ +y+
C04G6.1 198 IADFGMARAYAsastvrddanVGGHMTQYVSTRWYR-APEI-LFSmVEYD 245
skvDvWSlGviLyElltggplfpgadlpaftggd.evdqli.if.vlklP
+kvD WS+G+i++E+l ++ lfp g++ v+q+ i+ l++P
C04G6.1 246 TKVDLWSAGCIFAEMLLRRQLFP---------GKdSVSQIKmIVyYLGSP 286
fsdelpktridpleelfriikrp.........glrlplpsncSeelkdLl
++ + + +++++ + +++++ + + +++ S+e++ +
C04G6.1 287 EEE-------VINRITSDLVRDSieacgrktpLPFSAIFPKASPEARNMV 329
kkcLnkDPskRpGsatakeilnhpwf<-*
+ +L+ P+kR+ +a +il+hp++
C04G6.1 330 SYLLQISPWKRY---SADQILQHPFM 352