Motif confirmation by HMMer
hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file: /home/niguts/usr02/tshini/ykclst/db/Pfam_fs
Sequence file: hmm1/seq/C04H5.6
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Query: C04H5.6 CE15592 locus:mog-4 Helicases conserved C-terminal domain status:Confirmed SW:O45244 protein_id:CAB03845.1
Scores for sequence family classification (score includes all domains):
Model Description Score E-value N
-------- ----------- ----- ------- ---
HA2 Helicase associated domain (HA2) 153.3 4.3e-42 1
helicase_C Helicase conserved C-terminal domain 51.7 3.4e-13 1
Thymidylate_kin Thymidylate kinase 4.3 1.2 1
OTCace Aspartate/ornithine carbamoyltransfer 3.4 6.6 1
Lyase_8 Polysaccharide lyase family 8, super- 3.2 3.5 1
InvE InvE invasion protein 2.4 3.4 1
HSP70 Hsp70 protein 1.2 9 1
Parsed for domains:
Model Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
Thymidylate_kin 1/1 385 397 .. 1 13 [. 4.3 1.2
HSP70 1/1 584 607 .. 597 620 .] 1.2 9
Lyase_8 1/1 679 695 .. 287 303 .] 3.2 3.5
helicase_C 1/1 607 696 .. 1 72 [] 51.7 3.4e-13
InvE 1/1 708 717 .. 361 370 .] 2.4 3.4
OTCace 1/1 770 785 .. 129 143 .. 3.4 6.6
HA2 1/1 755 850 .. 1 114 [] 153.3 4.3e-42
Alignments of top-scoring domains:
Thymidylate_kin: domain 1 of 1, from 385 to 397: score 4.3, E = 1.2
*->iEGiDGaGKTTqa<-*
iEG G+GKTTq+
C04H5.6 385 IEGETGSGKTTQL 397
HSP70: domain 1 of 1, from 584 to 607: score 1.2, E = 9
*->keeikakteeLqkvvqkigekmyq<-*
+eei++ +e+L + + ++g+k+ +
C04H5.6 584 QEEIETVQEALMERSKALGSKIKE 607
Lyase_8: domain 1 of 1, from 679 to 695: score 3.2, E = 3.5
*->gisRaefkklaTkanke<-*
+is+a+ +++a +a+++
C04H5.6 679 TISKAAANQRAGRAGRT 695
helicase_C: domain 1 of 1, from 607 to 696: score 51.7, E = 3.4e-13
*->gikvarlhGglsqeeReeilekFrngkskvLvaTdvaarGiDipdvn
++ ++++++l+++ + +i+e ++ +kv++aT++a+++++i ++n
C04H5.6 607 ELIPLPVYANLPSDLQAKIFEPTPKDARKVVLATNIAETSVTIDGIN 653
lVInydl..................pwnpesyiQRiGRaGRaG<-*
+VI+ +++++++ + +++ ++ + +++ QR+GRaGR G
C04H5.6 654 YVIDPGFskqnsfdarsgvehlhvvTISKAAANQRAGRAGRTG 696
InvE: domain 1 of 1, from 708 to 717: score 2.4, E = 3.4
*->AYKkElaEqR<-*
AYK+El Eq
C04H5.6 708 AYKHELEEQP 717
OTCace: domain 1 of 1, from 770 to 785: score 3.4, E = 6.6
*->hRv.eTkVGkkiaEFG<-*
hR++ Tk+G+++aEF+
C04H5.6 770 HRGeLTKLGRRMAEFP 785
HA2: domain 1 of 1, from 755 to 850: score 153.3, E = 4.3e-42
*->llrAlelLyaLGALDppkeekddgeLTppLGrqmaelPldPrLsKML
l+ Ale+LyaLGAL+ ++geLT+ LGr+mae+P+dP +sKM+
C04H5.6 755 LVIALEQLYALGALN------HRGELTK-LGRRMAEFPCDPCMSKMI 794
llaaefgCldeiltIaAmLSvqspffgrpkekkeeearadearrkdslkF
+++ ++ C++ei+tIaAmLS+ +f+rpk++ + ad+ar+ F
C04H5.6 795 IASEKYECSEEIVTIAAMLSCNAAVFYRPKAQVI-H--ADSARK----GF 837
aspsgregDehltllnv<-*
sp gD h+tl nv
C04H5.6 838 WSP---AGD-HITLMNV 850