Motif confirmation by HMMer
hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file: /home/niguts/usr02/tshini/ykclst/db/Pfam_fs
Sequence file: hmm1/seq/C05D11.1
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Query: C05D11.1 CE03926 status:Partially_confirmed SW:P48053 protein_id:AAB53833.1
Scores for sequence family classification (score includes all domains):
Model Description Score E-value N
-------- ----------- ----- ------- ---
Peptidase_M16_C Peptidase M16 inactive domain 123.6 6.7e-34 2
Peptidase_M16 Insulinase (Peptidase family M16) 14.1 0.009 1
ASNC_trans_reg AsnC family 4.2 7.6 1
Parsed for domains:
Model Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
Peptidase_M16 1/1 57 105 .. 33 84 .. 14.1 0.009
Peptidase_M16_C 1/2 195 376 .. 1 197 [] 78.0 6.2e-21
ASNC_trans_reg 1/1 510 530 .. 84 104 .] 4.2 7.6
Peptidase_M16_C 2/2 758 899 .. 43 197 .] 45.7 9.3e-12
Alignments of top-scoring domains:
Peptidase_M16: domain 1 of 1, from 57 to 105: score 14.1, E = 0.009
*->GlAHFLEHmaFkGTkkypseneleeeleklGGslaRDvNAyTsrEhT
Gl H LEH+ F+G+kkyp + +++ ++ + NA T+ +hT
C05D11.1 57 GLPHTLEHLVFMGSKKYPF-KGVLDVIANRCLADG--TNAWTDTDHT 100
vYyve<-*
+Y+++
C05D11.1 101 AYTLS 105
Peptidase_M16_C: domain 1 of 2, from 195 to 376: score 78.0, E = 6.2e-21
*->ltredLkdFykkhYspdnmvlvvvGdvdhdellalae....kyfgdl
t+e+++d++kk+Y+ +nmv+ v+G vdhd++l+++++ ++++++++
C05D11.1 195 CTLEKVRDYHKKFYHLSNMVVTVCGMVDHDQVLEIMNnvenEHMSTV 241
paskepalvpprneApgkpr.pprepael.g.evvvr.kdv.pqahlala
p + +kp+++++ +++ ++ +v +++d ++ ++ +a
C05D11.1 242 PDH------------FPKPFsFALSDIKEsTvHRVECpTDDaSRGAVEVA 279
fpgpplsndpdsaaldvLnelLggggggmsSrLfqelr.ekegLpaysvs
+ + ++s+++++ l+vL ++L+++ + +L + + L a svs
C05D11.1 280 WFAHSPSDLETHSSLHVLFDYLSNT---SVAPLQKDFIlLEDPL-ASSVS 325
afndsysynd.ldtGlfgiya.tdpegenleeRvlelileeleklaeeGi
+++ + +++d +l +++++ +l+e ++ + ++k ++e +
C05D11.1 326 FHIA---EGVrCDLRLNFAGVpVE----KLDE----CAPKFFDKTVREHL 364
teeeleraknql<-*
e+ ++ ++++
C05D11.1 365 EEANFDMERMGY 376
ASNC_trans_reg: domain 1 of 1, from 510 to 530: score 4.2, E = 7.6
*->vrakDmesyrrflkekLsrlp<-*
+++kD e+++rf + L+++
C05D11.1 510 LIVKDLEAFDRFPVQSLTSNS 530
Peptidase_M16_C: domain 2 of 2, from 758 to 899: score 45.7, E = 9.3e-12
*->lpaskepal.vpprneApgkpr.pprepael.g.evvvr.kdvpqah
+ + ++++ p +++++ ++e ++l+ ++ +++ +++ ++
C05D11.1 758 WTWVQADPRfGP-----GHQFSaEAGENVSLeLgKELLIgVGGSESS 799
lalafpgppl.sndpdsaaldvLnelLggggggmsSrLfqelrekegLpa
+++ + ++++n+++ ++++++ ++L++ ++L++++r gL a
C05D11.1 800 FIYQTSFLDAnWNSEELIPAMIFGQYLSQC----EGPLWRAIR-GDGL-A 843
ysvsafndsysyndldtGlfgiya.tdpegenleeRvlelileeleklae
y+++ f+ +++ + +++y ++p+ + ++e +++ ++k++e
C05D11.1 844 YGANVFVKPDR----KQITLSLYRcAQPA---V---AYERTRDIIRKIVE 883
eG.iteeeleraknql<-*
G+i+++e+e ak++
C05D11.1 884 SGeISKAEFEGAKRST 899