Motif confirmation by HMMer
hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file: /home/niguts/usr02/tshini/ykclst/db/Pfam_fs
Sequence file: hmm1/seq/C05D11.7a
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Query: C05D11.7a CE29663 status:Partially_confirmed SW:Q11186 protein_id:AAB53832.2
Scores for sequence family classification (score includes all domains):
Model Description Score E-value N
-------- ----------- ----- ------- ---
Patatin Patatin-like phospholipase 147.6 2.2e-40 1
LIP Secretory lipase 6.4 0.5 1
HOK_GEF Hok/gef family 5.7 5.4 1
Neocarzinostat Neocarzinostatin family 3.4 5.5 1
DUF518 Protein of unknown function (DUF518) 2.4 6.7 1
Parsed for domains:
Model Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
DUF518 1/1 14 33 .. 454 474 .] 2.4 6.7
LIP 1/1 34 54 .. 99 117 .. 6.4 0.5
Patatin 1/1 13 180 .. 1 268 [] 147.6 2.2e-40
Neocarzinostat 1/1 181 192 .. 1 12 [. 3.4 5.5
HOK_GEF 1/1 518 533 .. 28 43 .. 5.7 5.4
Alignments of top-scoring domains:
DUF518: domain 1 of 1, from 14 to 33: score 2.4, E = 6.7
*->staIlgvallvllaailarRr<-*
s++++g++ v+ a+ +a++
C05D11.7a 14 SFSGCGFL-CVYHAGVAAAIK 33
LIP: domain 1 of 1, from 34 to 54: score 6.4, E = 0.5
*->eYAPELk.n.LiGAAlGgfva<-*
eYAPEL +n+++GA +G+ va
C05D11.7a 34 EYAPELLqNkILGASAGSIVA 54
Patatin: domain 1 of 1, from 13 to 180: score 147.6, E = 2.2e-40
*->LvLdGGGarGiaWhiGvLkaLeeagieldGpdarlldyfDviaGTSa
L+++G+G+++ + h+Gv +a++e ++ l + i G Sa
C05D11.7a 13 LSFSGCGFLCVY-HAGVAAAIKEYAP-------EL--LQNKILGASA 49
GaivaallasgrdparplfaaeelkefylevkkriFldgspkdkvenlla
G+iva+ l++g + +++++ +l+v+++
C05D11.7a 50 GSIVACGLITGV--C-----ISHATSTILKVVSQ---------------- 76
ftrlalaaklllrlldltgprlslllaglydgdklekllkdllregtfgd
+r + +++++ ++ ++ l +++d+l
C05D11.7a 77 -----------ARSRTFGPLH-PE-------FN-LLGIVRDEL-----EV 101
llledlpkrlrresltfddfllyielagkrlvipatmvtavdlstgeapv
+l++ ++ e++++rlvi+ t ++s++e +v
C05D11.7a 102 ILPPNAY-----------------EMCTGRLVISLT-----RWSDHE-NV 128
ifrnyealnnstpsdgdlwdAvraSsaaPgyFppvelptedkgkklepvn
i+ ++ +s++dl+dA+++S+++P y++ p++
C05D11.7a 129 II-------DEYRSNADLIDAIMCSCFIPLYCGIT------------PPK 159
idghllvDGGvvdNnPvlvar<-*
++g++++DGGv+dN P+ + +
C05D11.7a 160 FRGVQYIDGGVSDNQPIYDEH 180
Neocarzinostat: domain 1 of 1, from 181 to 192: score 3.4, E = 5.5
*->avsVsPAsGLSD<-*
+v+VsP sG SD
C05D11.7a 181 TVTVSPFSGESD 192
HOK_GEF: domain 1 of 1, from 518 to 533: score 5.7, E = 5.4
*->LCElrirqGntEvaAf<-*
L+E+++r++n + + f
C05D11.7a 518 LYEFHYRDENQVMKTF 533