Motif confirmation by HMMer


hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /home/niguts/usr02/tshini/ykclst/db/Pfam_fs
Sequence file:            hmm1/seq/C05D11.7a
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Query:  C05D11.7a  CE29663    status:Partially_confirmed SW:Q11186 protein_id:AAB53832.2

Scores for sequence family classification (score includes all domains):
Model          Description                              Score    E-value  N
--------       -----------                              -----    ------- ---
Patatin        Patatin-like phospholipase               147.6    2.2e-40   1
LIP            Secretory lipase                           6.4        0.5   1
HOK_GEF        Hok/gef family                             5.7        5.4   1
Neocarzinostat Neocarzinostatin family                    3.4        5.5   1
DUF518         Protein of unknown function (DUF518)       2.4        6.7   1

Parsed for domains:
Model          Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
--------       ------- ----- -----    ----- -----      -----  -------
DUF518           1/1      14    33 ..   454   474 .]     2.4      6.7
LIP              1/1      34    54 ..    99   117 ..     6.4      0.5
Patatin          1/1      13   180 ..     1   268 []   147.6  2.2e-40
Neocarzinostat   1/1     181   192 ..     1    12 [.     3.4      5.5
HOK_GEF          1/1     518   533 ..    28    43 ..     5.7      5.4

Alignments of top-scoring domains:
DUF518: domain 1 of 1, from 14 to 33: score 2.4, E = 6.7
                   *->staIlgvallvllaailarRr<-*
                      s++++g++  v+ a+ +a++
   C05D11.7a    14    SFSGCGFL-CVYHAGVAAAIK    33

LIP: domain 1 of 1, from 34 to 54: score 6.4, E = 0.5
                   *->eYAPELk.n.LiGAAlGgfva<-*
                      eYAPEL +n+++GA +G+ va
   C05D11.7a    34    EYAPELLqNkILGASAGSIVA    54

Patatin: domain 1 of 1, from 13 to 180: score 147.6, E = 2.2e-40
                   *->LvLdGGGarGiaWhiGvLkaLeeagieldGpdarlldyfDviaGTSa
                      L+++G+G+++ + h+Gv +a++e ++        l    + i G Sa
   C05D11.7a    13    LSFSGCGFLCVY-HAGVAAAIKEYAP-------EL--LQNKILGASA 49

                   GaivaallasgrdparplfaaeelkefylevkkriFldgspkdkvenlla
                   G+iva+ l++g   +     +++++  +l+v+++
   C05D11.7a    50 GSIVACGLITGV--C-----ISHATSTILKVVSQ---------------- 76

                   ftrlalaaklllrlldltgprlslllaglydgdklekllkdllregtfgd
                              +r + +++++ ++       ++ l  +++d+l
   C05D11.7a    77 -----------ARSRTFGPLH-PE-------FN-LLGIVRDEL-----EV 101

                   llledlpkrlrresltfddfllyielagkrlvipatmvtavdlstgeapv
                   +l++ ++                 e++++rlvi+ t     ++s++e +v
   C05D11.7a   102 ILPPNAY-----------------EMCTGRLVISLT-----RWSDHE-NV 128

                   ifrnyealnnstpsdgdlwdAvraSsaaPgyFppvelptedkgkklepvn
                   i+       ++ +s++dl+dA+++S+++P y++              p++
   C05D11.7a   129 II-------DEYRSNADLIDAIMCSCFIPLYCGIT------------PPK 159

                   idghllvDGGvvdNnPvlvar<-*
                   ++g++++DGGv+dN P+ + +
   C05D11.7a   160 FRGVQYIDGGVSDNQPIYDEH    180

Neocarzinostat: domain 1 of 1, from 181 to 192: score 3.4, E = 5.5
                   *->avsVsPAsGLSD<-*
                      +v+VsP sG SD
   C05D11.7a   181    TVTVSPFSGESD    192

HOK_GEF: domain 1 of 1, from 518 to 533: score 5.7, E = 5.4
                   *->LCElrirqGntEvaAf<-*
                      L+E+++r++n + + f
   C05D11.7a   518    LYEFHYRDENQVMKTF    533



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