Motif confirmation by HMMer
hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
HMM file: /home/niguts/usr02/tshini/ykclst/db/Pfam_fs
Sequence file: hmm1/seq/C05D2.4
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
Query: C05D2.4 CE01141 aromatic-L-amino-acid decarboxylase status:Partially_confirmed TR:O45137 protein_id:AAC02721.1
Scores for sequence family classification (score includes all domains):
Model Description Score E-value N
-------- ----------- ----- ------- ---
pyridoxal_deC Pyridoxal-dependent decarboxylase conse 424.1 1.3e-123 2
Phage_holin_3 Phage holin family (Lysis protein S) 4.7 4 1
Parsed for domains:
Model Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
pyridoxal_deC 1/2 35 168 .. 1 134 [. 161.7 2.8e-46
Phage_holin_3 1/1 408 419 .. 89 100 .. 4.7 4
pyridoxal_deC 2/2 214 452 .. 144 399 .] 262.4 1.3e-75
Alignments of top-scoring domains:
pyridoxal_deC: domain 1 of 2, from 35 to 168: score 161.7, E = 2.8e-46
*->PgylrpllpeaaPikpeslldileDieknimpGvthWhsPnfhayfp
Pgy l p+ aP pe++ +i+ D e +++ G thWh+P+f+ayfp
C05D2.4 35 PGYINDLVPAQAPATPEDWAKIFDDLENVVVNGATHWHHPHFFAYFP 81
agnSypslLGdmLsdaINcngFtwessPAcTELEvvvmdwlgkmlglPke
+++Sy s+ +d Ls++I+ +gFtw s P TELE+ +dw+ +++glP++
C05D2.4 82 TALSYQSIMADILSGGIAGIGFTWKSCPSMTELEMSSLDWVVDLMGLPEH 131
flgssgsqGGGvlqgggSESnLlallAARtkwlrrmk<-*
f s+ + G G++q+++S S+++a++AAR +r k
C05D2.4 132 FKNSHNGPGCGIIQSTASDSTMIAIMAARATHVERIK 168
Phage_holin_3: domain 1 of 1, from 408 to 419: score 4.7, E = 4
*->GvdkIgeflkrf<-*
GvdkI+e+l+r+
C05D2.4 408 GVDKIREYLRRT 419
pyridoxal_deC: domain 2 of 2, from 214 to 452: score 262.4, E = 1.3e-75
*->eIlgKLVlYtSdqaHsSvmeKaakiagVktdnlrlipsded...ngk
++ ++ V+Y+SdqaHsSv eK a + V+ +r ++ + +n +
C05D2.4 214 TVFERFVMYCSDQAHSSV-EKGAMLSAVR---MRKLKATRGflgNYG 256
mrgddLekaIeedkerGLiPffVcATlGTTvsgaFDnlqelgdicaklgi
+ ++L++aI ed +rG+iPf AT+GTT s+ +D ++elg++c++
C05D2.4 257 VSRETLQNAIKEDRARGYIPFMFLATVGTTCSCGVDQVDELGPVCVE--- 303
etGydlWlHVDAAyaGsAfIcPefRhplewlfGiEraDSisfnPHKwmlv
++l+lHVDAAyaG+ +c ef + +G E +DS++fn HK ++v
C05D2.4 304 ---EGLYLHVDAAYAGTFALCEEFKY---LIRGMEHVDSFNFNLHKAGMV 347
lldCsalwvKdksaLqdalsvnpeYLkhndkqsdvavDfktwqIplSRgn
++dCs +w+K+ + + + ++v++ YL h+ + + a D+++ q +l+R
C05D2.4 348 NFDCSPMWFKNGTHVSRYFNVDAVYLAHEYQTT--ASDYRHLQVALGR-- 393
rfriLKlWfvlRsyGveglqnhIrehvelAkyfedlvrkdgrdFeivadp
rfr+LK+WfvlR Gv +++ r+ lA+ f +l+ + g Fe +
C05D2.4 394 RFRSLKIWFVLRNMGVDKIREYLRRTELLAAEFSKLILENGK-FEHFV-- 440
ernlglVcFrlK<-*
+ +lgl cFrlK
C05D2.4 441 PQHLGLTCFRLK 452