Motif confirmation by HMMer
hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file: /home/niguts/usr02/tshini/ykclst/db/Pfam_fs
Sequence file: hmm1/seq/C05D2.3
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Query: C05D2.3 CE29022 aromatic-L-amino-acid decarboxylase status:Partially_confirmed TR:O45138 protein_id:AAC02720.2
Scores for sequence family classification (score includes all domains):
Model Description Score E-value N
-------- ----------- ----- ------- ---
pyridoxal_deC Pyridoxal-dependent decarboxylase conse 302.5 2.6e-87 2
DUF585 Protein of unknown function (DUF585) 8.2 0.23 1
PsaL Photosystem I reaction centre subunit X 3.6 6.9 1
Lipoprotein_9 NLPA lipoprotein 3.3 6.8 1
Parsed for domains:
Model Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
pyridoxal_deC 1/2 35 160 .. 1 126 [. 128.7 1.2e-36
DUF585 1/1 157 183 .. 1 27 [. 8.2 0.23
PsaL 1/1 202 214 .. 1 13 [. 3.6 6.9
Lipoprotein_9 1/1 279 305 .. 1 29 [. 3.3 6.8
pyridoxal_deC 2/2 219 445 .. 150 399 .] 173.7 9.1e-50
Alignments of top-scoring domains:
pyridoxal_deC: domain 1 of 2, from 35 to 160: score 128.7, E = 1.2e-36
*->PgylrpllpeaaPikpeslldileDieknimpGvthWhsPnfhayfp
Pgy + p P pes++++++D ek+i G +hW +P+f+ayf+
C05D2.3 35 PGYIEKSVPSNPPTTPESWEKVFGDLEKVIFNGSSHWNHPHFFAYFS 81
agnSypslLGdmLsdaINcngFtwessPAcTELEvvvmdwlgkmlglPke
ag y+s+L+d s++++++gFtw++ P TELE +++dwl ++ lP e
C05D2.3 82 AGIGYHSILADIISSGLGSVGFTWIACPPITELEKITLDWLVDLTSLPVE 131
flgssgsqGGGvlqgggSESnLlallAAR<-*
f s+++ G G++q+++S S+L+a++ AR
C05D2.3 132 FKNSHPGHGCGIIQSSASDSTLIAIMTAR 160
DUF585: domain 1 of 1, from 157 to 183: score 8.2, E = 0.23
*->MSkfvadDetYvRqVPS.FQWllDqtle<-*
M a e +++q PS+FQWl+ t+e
C05D2.3 157 MTARAAKVE-FIKQNPStFQWLINSTSE 183
PsaL: domain 1 of 1, from 202 to 214: score 3.6, E = 6.9
*->qqvvkPyngDPfV<-*
+++++Py+ DP V
C05D2.3 202 TDIITPYYHDPRV 214
Lipoprotein_9: domain 1 of 1, from 279 to 305: score 3.3, E = 6.8
*->tikvGatpgPhaeilewvvkpllKkkGGl<-*
++vG+t++ a+ +e ++ ++ +k+G l
C05D2.3 279 ALTVGTTATCAADDVE-KIGQICQKEG-L 305
pyridoxal_deC: domain 2 of 2, from 219 to 445: score 173.7, E = 9.1e-50
*->VlYtSdqaHsSvmeKaakiagVktdnlrlipsdedngkmrgddLeka
V+Y dqaHsSv eK a +agV+ lr + +n +m+ + L+ a
C05D2.3 219 VMYFTDQAHSSV-EKGAMLAGVRFRKLRSVRGYMENYEMDSKILIDA 264
IeedkerGLiPffVcATlGTTvsgaFDnlqelgdicaklgietGydlWlH
Ie+d rG iPf V+ T+GTT ++a D+++ +g ic+k ++l+lH
C05D2.3 265 IEQDRSRGFIPFMVALTVGTTATCAADDVEKIGQICQK------EGLYLH 308
VDAAyaGsAf.IcPefRhplewlfGiEraDSisfnPHKwmlvlldCsalw
+Af c ef + +G+ ++DS ++ HK ++ ++dC+ lw
C05D2.3 309 -------GAFaFCDEFKY---LVNGLKYVDSYNTDLHKAGMINFDCCPLW 348
vKdksaLqdalsvnpeYLkhndkqsdvavDfktwqIplSRgnrfriLKlW
+K+ + + +v+p YL h+ + s D+++ pl+R rfr+LK+W
C05D2.3 349 FKNGTYASRYYNVDPVYLAHEYQSS--NMDYRHLEVPLGR--RFRSLKVW 394
fvlRsyGveglqnhIrehvelAkyfedlvrkdgrdFeivadpernlglVc
f R Gve ++++r+ v lA f++++ + Fe+ + +++lg+
C05D2.3 395 FTMRNMGVEKIREYQRKTVSLALLFTKIIVEGDK-FELFT--PPHLGMAT 441
FrlK<-*
FrlK
C05D2.3 442 FRLK 445