Motif confirmation by HMMer
hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file: /home/niguts/usr02/tshini/ykclst/db/Pfam_fs
Sequence file: hmm1/seq/C05D2.10a
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Query: C05D2.10a CE26861 status:Confirmed TR:Q95X41 protein_id:AAK67207.1
Scores for sequence family classification (score includes all domains):
Model Description Score E-value N
-------- ----------- ----- ------- ---
WD40 WD domain, G-beta repeat 184.4 1.9e-51 6
IPK Inositol polyphosphate kinase 6.1 0.98 1
HALZ Homeobox associated leucine zipper 4.9 7.3 1
HSP70 Hsp70 protein 2.7 3.3 1
Parsed for domains:
Model Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
HSP70 1/1 3 65 .. 552 620 .] 2.7 3.3
HALZ 1/1 59 84 .. 20 45 .] 4.9 7.3
IPK 1/1 113 154 .. 1 47 [. 6.1 0.98
WD40 1/6 128 166 .. 1 39 [] 31.6 3.4e-07
WD40 2/6 170 221 .. 1 39 [] 40.6 9.7e-10
WD40 3/6 268 306 .. 1 39 [] 40.4 1e-09
WD40 4/6 310 348 .. 1 39 [] 34.7 4.4e-08
WD40 5/6 353 390 .. 1 39 [] 42.5 2.7e-10
WD40 6/6 447 478 .. 9 39 .] 11.7 0.16
Alignments of top-scoring domains:
HSP70: domain 1 of 1, from 3 to 65: score 2.7, E = 3.3
*->stekslkeeklgdklseadkekiekkvedaiewLkealegeddaeke
+ e+s + e ++k+ + ++ +++ a++ L+ +l d ++ +
C05D2.10a 3 QSENSKDAE--KEKVMRSRRGTVDTEISGALTVLQSSL---D-VDDA 43
eikakteeLqkvvqkigekmyq<-*
++a++ L +++k + +y+
C05D2.10a 44 PYRARLYQLFGHIEKEFDTLYA 65
HALZ: domain 1 of 1, from 59 to 84: score 4.9, E = 7.3
*->endsLqkendeLrAevlslkeklqde<-*
e+d L +en +LrA ++ l+ +++
C05D2.10a 59 EFDTLYAENCALRARIVQLTQTEGEA 84
IPK: domain 1 of 1, from 113 to 154: score 6.1, E = 0.98
*->keivklhpfveskkkaypwvqlegHkeegsfqaarrksGdsgriles
++ ++ +p++ + k++++ +legH ++g++ +a +ds r +++
C05D2.10a 113 RTALRGPPVFRDGSKFRLSRLLEGH-KDGVWHVA----ADSTRNICA 154
<-*
C05D2.10a - -
WD40: domain 1 of 6, from 128 to 166: score 31.6, E = 3.4e-07
*->geclatl.gHtspvtcvafspdsgpylasgSrDgtiklWd<-*
+ + l+gH+++v+ va + ++++as+S+D t ++W+
C05D2.10a 128 FRLSRLLeGHKDGVWHVAADST-RNICASASADQTARIWS 166
WD40: domain 2 of 6, from 170 to 221: score 40.6, E = 9.7e-10
*->geclatl.gHtspvtcvafspd............sgpylasgSrDgt
g clat++gHt++v+cva+s + + +++++++++sg +la++S D +
C05D2.10a 170 GACLATYtGHTGSVNCVAISNNcavdstegsgpaSGLLLATASGDES 216
iklWd<-*
++W+
C05D2.10a 217 THIWK 221
WD40: domain 3 of 6, from 268 to 306: score 40.4, E = 1e-09
*->geclatl.gHtspvtcvafspdsgpylasgSrDgtiklWd<-*
+ ++ l+gH +pv+c+ + g++++++S+D+t +Wd
C05D2.10a 268 RVPVMRLtGHRAPVSCCEWLAG-GQQMVTASWDRTANVWD 306
WD40: domain 4 of 6, from 310 to 348: score 34.7, E = 4.4e-08
*->geclatl.gHtspvtcvafspdsgpylasgSrDgtiklWd<-*
ge++ +l+gH+s + ++ + + +++++++S D t +lWd
C05D2.10a 310 GEVVNILsGHESELNHCSTHSN-QKLVLTSSKDSTFRLWD 348
WD40: domain 5 of 6, from 353 to 390: score 42.5, E = 2.7e-10
*->geclatl.gHtspvtcvafspdsgpylasgSrDgtiklWd<-*
+ +a+++gH+++vt+v+f+ d +++s+S+D t+k+Wd
C05D2.10a 353 IQSVAVFqGHQDSVTSVSFNTD--YRIVSSSDDATVKIWD 390
WD40: domain 6 of 6, from 447 to 478: score 11.7, E = 0.16
*->Htspvtcvafspd.sgpylasgSrDgtiklWd<-*
H+ vtc+a+ + + + l++++ D+ + W+
C05D2.10a 447 HERMVTCCAWLDEhPANNLLTAGFDRMVAAWK 478