hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /home/niguts/usr02/tshini/ykclst/db/Pfam_fs
Sequence file:            hmm1/seq/C05D9.2
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Query:  C05D9.2  CE07928    status:Partially_confirmed TR:Q9GYK0 protein_id:AAF98603.1

Scores for sequence family classification (score includes all domains):
Model         Description                               Score    E-value  N
--------      -----------                               -----    ------- ---
Lamp          Lysosome-associated membrane glycoprote    34.5    3.3e-08   1
Pox_polyA_pol Poxvirus poly(A) polymerase catalytic s     2.8        4.6   1

Parsed for domains:
Model         Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
--------      ------- ----- -----    ----- -----      -----  -------
Pox_polyA_pol   1/1      60    68 ..   473   481 .]     2.8      4.6
Lamp            1/1     211   260 ..   331   380 ..    34.5  3.3e-08

Alignments of top-scoring domains:
Pox_polyA_pol: domain 1 of 1, from 60 to 68: score 2.8, E = 4.6
                   *->dIEKDiIth<-*
                      d EKD+I+h
     C05D9.2    60    DSEKDVIVH    68

Lamp: domain 1 of 1, from 211 to 260: score 34.5, E = 3.3e-08
                   *->VQAFkVtdkgkFGsaeeCsaDedNf..LiPIaVGaALaGLllLVLIA
                      +QAF  + ++ FG+ e C+ D+ ++ +L+PI+VG ALaGL++L L
     C05D9.2   211    IQAFMED-TDSFGPKETCPTDQ-STldLVPIIVGSALAGLIVLTLVV 255

                   YlIGR<-*
                   YlI R
     C05D9.2   256 YLIYR    260

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