Motif confirmation by HMMer
hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file: /home/niguts/usr02/tshini/ykclst/db/Pfam_fs
Sequence file: hmm1/seq/C06A1.4
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Query: C06A1.4 CE02980 status:Partially_confirmed TR:Q17685 protein_id:CAA90054.1
Scores for sequence family classification (score includes all domains):
Model Description Score E-value N
-------- ----------- ----- ------- ---
Piwi Piwi domain 428.6 5.6e-125 1
PAZ PAZ domain 147.3 4e-41 1
Ins_element1 Insertion element protein 4.6 5.6 1
THF_DHG_CYH Tetrahydrofolate dehydrogenase/cyclohydr 4.3 0.71 1
CoA_trans Coenzyme A transferase 3.1 5.9 1
Parsed for domains:
Model Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
Ins_element1 1/1 204 221 .. 54 71 .. 4.6 5.6
THF_DHG_CYH 1/1 275 304 .. 1 31 [. 4.3 0.71
PAZ 1/1 291 425 .. 1 161 [] 147.3 4e-41
CoA_trans 1/1 810 824 .. 229 245 .] 3.1 5.9
Piwi 1/1 568 898 .. 1 341 [] 428.6 5.6e-125
Alignments of top-scoring domains:
Ins_element1: domain 1 of 1, from 204 to 221: score 4.6, E = 5.6
*->eqIvdmAmNGaGiRyTAR<-*
+qI ++A +iR TAR
C06A1.4 204 QQILELALTQPCIRNTAR 221
THF_DHG_CYH: domain 1 of 1, from 275 to 304: score 4.3, E = 0.71
*->mgAqiidGkalAqeiraelaqeVaalkkakg<-*
++ ++idG+++A ++++ + ++ ++++ +++
C06A1.4 275 NPSVVIDGMKVAFHKNQPILDKLKEIT-TQP 304
PAZ: domain 1 of 1, from 291 to 425: score 147.3, E = 4e-41
*->lpvlelledyltertsiklsdrdrkkvkealkGlkVetthrnnkglq
+p+l++l++++t++ +++l+ +++++++ ++kGl+++ t+++
C06A1.4 291 QPILDKLKEITTQPVEHGLKGPEKDRCAAVIKGLDCYSTYGG----- 332
eaprkykiaglssnpaplskFplkdnnGneegkeitvaeYFkekYnirLk
+ r++ki+g++++ a + +F l+d g +tva+YF++ Yni+L+
C06A1.4 333 -RERHHKIEGIHHEGAGNARFQLND------GGSCTVAQYFEDVYNITLR 375
ypdlPllvvggrsknlNlLPRfnkrnsqknylPpELcsivpgQrytkklf
yp +l+v++ r++ n++P+EL++i+++Qr+ +++
C06A1.4 376 YPGANLIVSKERGNI--------------NFYPMELLKISSHQRVQIPQQ 411
erqtsalikkraqr<-*
+ +s++++k++++
C06A1.4 412 TSAQSQKTTKESAV 425
CoA_trans: domain 1 of 1, from 810 to 824: score 3.1, E = 5.9
*->htPGilVDrvVkaprgt<-*
++PGi+VD +V +p +
C06A1.4 810 IAPGIMVDSIVTNP--A 824
Piwi: domain 1 of 1, from 568 to 898: score 428.6, E = 5.6e-125
*->livvvlpddnkedlekflydeiKkreltelgipsQcvllktlkkksk
++v++++dd+++ l ++++K +e+ ++++Q+++l+++ ++ +
C06A1.4 568 MFVFIITDDSITTL----HQRYKVIEKDT-KMIIQDMKLSKALSVIN 609
qGgrltltNvilkanmKlGGlNyklniekeprckVCNemrviplkptlii
+G+rltl+Nvi+k+n+Kl G Ny++++ k+ +l+++lii
C06A1.4 610 AGKRLTLENVINKTNVKLRGSNYVFVDVKK------------QLDSHLII 647
GfDvshppaRTkfDrenggrlnnpsvagvvasmdsphgtkfrgdvrlqpa
G+++s+ppa+Tk+++en+g+ln p+v+g++++++ h+++f gd++l +a
C06A1.4 648 GVGISAPPAGTKYAMENKGVLN-PNVIGYAYNAQ--HNQEFSGDFMLNSA 694
gqElltdlkkgiiresLrsfykntrkkkPkrIivYRDGvSEGqfsqvlny
+q++l+++++ i+++sL ++++ +++++P r+i+YR +SEG++ ++++y
C06A1.4 695 SQDTLAPIED-IVMHSLSEYQRFHNGGLPRRVIIYRTETSEGNHGSIMAY 743
EvnqikeackklsesyqeqePkltvIvvqKrHhtRfFasdksdggs....
E+++++ a++ +s+ +q l++Ivv+K H++RfF++d + + +++
C06A1.4 744 EIPLVRVAMRGFSPEIQ-----LVYIVVSKDHSFRFFKPDVTSLAArpqa 788
...............kakaqNvpPGTvVDdkitspeyydFylcsqagrqG
++++ ++++ + +ka++ N+ PG+ VD+ +t+p++++F+l+s++++qG
C06A1.4 789 tsstasrhsampaapKAWDLNIAPGIMVDSIVTNPACKQFFLNSHITLQG 838
TvkPthYtVlyDdigeyylsadelqdLTykLCymyqrvtrpvslPaPvyY
T+k++ YtVl+Dd++ +s+ l+d+TykLC+++q+v+ p+slP+ +y+
C06A1.4 839 TAKTPLYTVLADDAK---VSMTALEDITYKLCHLHQIVGLPTSLPTSLYV 885
AhllAkrgrnnlk<-*
A+++Akrgrn+++
C06A1.4 886 ANEYAKRGRNLWN 898