Motif confirmation by HMMer


hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /home/niguts/usr02/tshini/ykclst/db/Pfam_fs
Sequence file:            hmm1/seq/C06A1.4
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Query:  C06A1.4  CE02980    status:Partially_confirmed TR:Q17685 protein_id:CAA90054.1

Scores for sequence family classification (score includes all domains):
Model        Description                                Score    E-value  N
--------     -----------                                -----    ------- ---
Piwi         Piwi domain                                428.6   5.6e-125   1
PAZ          PAZ domain                                 147.3      4e-41   1
Ins_element1 Insertion element protein                    4.6        5.6   1
THF_DHG_CYH  Tetrahydrofolate dehydrogenase/cyclohydr     4.3       0.71   1
CoA_trans    Coenzyme A transferase                       3.1        5.9   1

Parsed for domains:
Model        Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
--------     ------- ----- -----    ----- -----      -----  -------
Ins_element1   1/1     204   221 ..    54    71 ..     4.6      5.6
THF_DHG_CYH    1/1     275   304 ..     1    31 [.     4.3     0.71
PAZ            1/1     291   425 ..     1   161 []   147.3    4e-41
CoA_trans      1/1     810   824 ..   229   245 .]     3.1      5.9
Piwi           1/1     568   898 ..     1   341 []   428.6 5.6e-125

Alignments of top-scoring domains:
Ins_element1: domain 1 of 1, from 204 to 221: score 4.6, E = 5.6
                   *->eqIvdmAmNGaGiRyTAR<-*
                      +qI ++A    +iR TAR
     C06A1.4   204    QQILELALTQPCIRNTAR    221

THF_DHG_CYH: domain 1 of 1, from 275 to 304: score 4.3, E = 0.71
                   *->mgAqiidGkalAqeiraelaqeVaalkkakg<-*
                      ++ ++idG+++A ++++ + ++ ++++ +++
     C06A1.4   275    NPSVVIDGMKVAFHKNQPILDKLKEIT-TQP    304

PAZ: domain 1 of 1, from 291 to 425: score 147.3, E = 4e-41
                   *->lpvlelledyltertsiklsdrdrkkvkealkGlkVetthrnnkglq
                      +p+l++l++++t++ +++l+ +++++++ ++kGl+++ t+++
     C06A1.4   291    QPILDKLKEITTQPVEHGLKGPEKDRCAAVIKGLDCYSTYGG----- 332

                   eaprkykiaglssnpaplskFplkdnnGneegkeitvaeYFkekYnirLk
                    + r++ki+g++++ a + +F l+d      g  +tva+YF++ Yni+L+
     C06A1.4   333 -RERHHKIEGIHHEGAGNARFQLND------GGSCTVAQYFEDVYNITLR 375

                   ypdlPllvvggrsknlNlLPRfnkrnsqknylPpELcsivpgQrytkklf
                   yp  +l+v++ r++               n++P+EL++i+++Qr+ +++
     C06A1.4   376 YPGANLIVSKERGNI--------------NFYPMELLKISSHQRVQIPQQ 411

                   erqtsalikkraqr<-*
                   +  +s++++k++++
     C06A1.4   412 TSAQSQKTTKESAV    425

CoA_trans: domain 1 of 1, from 810 to 824: score 3.1, E = 5.9
                   *->htPGilVDrvVkaprgt<-*
                      ++PGi+VD +V +p  +
     C06A1.4   810    IAPGIMVDSIVTNP--A    824

Piwi: domain 1 of 1, from 568 to 898: score 428.6, E = 5.6e-125
                   *->livvvlpddnkedlekflydeiKkreltelgipsQcvllktlkkksk
                      ++v++++dd+++ l    ++++K +e+   ++++Q+++l+++ ++ +
     C06A1.4   568    MFVFIITDDSITTL----HQRYKVIEKDT-KMIIQDMKLSKALSVIN 609

                   qGgrltltNvilkanmKlGGlNyklniekeprckVCNemrviplkptlii
                   +G+rltl+Nvi+k+n+Kl G Ny++++ k+            +l+++lii
     C06A1.4   610 AGKRLTLENVINKTNVKLRGSNYVFVDVKK------------QLDSHLII 647

                   GfDvshppaRTkfDrenggrlnnpsvagvvasmdsphgtkfrgdvrlqpa
                   G+++s+ppa+Tk+++en+g+ln p+v+g++++++  h+++f gd++l +a
     C06A1.4   648 GVGISAPPAGTKYAMENKGVLN-PNVIGYAYNAQ--HNQEFSGDFMLNSA 694

                   gqElltdlkkgiiresLrsfykntrkkkPkrIivYRDGvSEGqfsqvlny
                   +q++l+++++ i+++sL ++++ +++++P r+i+YR  +SEG++ ++++y
     C06A1.4   695 SQDTLAPIED-IVMHSLSEYQRFHNGGLPRRVIIYRTETSEGNHGSIMAY 743

                   EvnqikeackklsesyqeqePkltvIvvqKrHhtRfFasdksdggs....
                   E+++++ a++ +s+ +q     l++Ivv+K H++RfF++d  + + +++
     C06A1.4   744 EIPLVRVAMRGFSPEIQ-----LVYIVVSKDHSFRFFKPDVTSLAArpqa 788

                   ...............kakaqNvpPGTvVDdkitspeyydFylcsqagrqG
                   ++++ ++++  +  +ka++ N+ PG+ VD+ +t+p++++F+l+s++++qG
     C06A1.4   789 tsstasrhsampaapKAWDLNIAPGIMVDSIVTNPACKQFFLNSHITLQG 838

                   TvkPthYtVlyDdigeyylsadelqdLTykLCymyqrvtrpvslPaPvyY
                   T+k++ YtVl+Dd++   +s+  l+d+TykLC+++q+v+ p+slP+ +y+
     C06A1.4   839 TAKTPLYTVLADDAK---VSMTALEDITYKLCHLHQIVGLPTSLPTSLYV 885

                   AhllAkrgrnnlk<-*
                   A+++Akrgrn+++
     C06A1.4   886 ANEYAKRGRNLWN    898



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