hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /home/niguts/usr02/tshini/ykclst/db/Pfam_fs
Sequence file:            hmm1/seq/C06A5.8
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Query:  C06A5.8  CE07955    status:Partially_confirmed TR:O01481 protein_id:AAB52441.1

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N
-------- -----------                                    -----    ------- ---
zf-C3HC4 Zinc finger, C3HC4 type (RING finger)           28.9    2.1e-09   1
DUF310   Protein of unknown function (DUF310)             5.9        1.9   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
zf-C3HC4   1/1      38    83 ..     1    50 []    28.9  2.1e-09
DUF310     1/1     138   158 ..    34    54 ..     5.9      1.9

Alignments of top-scoring domains:
zf-C3HC4: domain 1 of 1, from 38 to 83: score 28.9, E = 2.1e-09
                   *->CrICleelkepsndfplilpCgHsGslkyfCrsClerWls.gntt.v
                      C++C+ ++ e +++ +  l CgH+     fC +C++++++ gn+  +
     C06A5.8    38    CQVCCTNYNETTKL-ARGLHCGHT-----FCTECIKTMQKyGNSAyL 78

                   kCplC<-*
                    Cp C
     C06A5.8    79 ECPSC    83

DUF310: domain 1 of 1, from 138 to 158: score 5.9, E = 1.9
                   *->Eakreletdlkanllkkfegl<-*
                      E +r+l+ d+ka+l++kfe+l
     C06A5.8   138    EGYRLLIADVKADLMAKFEQL    158

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