hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /home/niguts/usr02/tshini/ykclst/db/Pfam_fs
Sequence file:            hmm1/seq/C06B8.8
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Query:  C06B8.8  CE20485  locus:rpl-38  status:Confirmed SW:O17570 protein_id:CAB03853.1

Scores for sequence family classification (score includes all domains):
Model          Description                              Score    E-value  N
--------       -----------                              -----    ------- ---
Ribosomal_L38e Ribosomal L38e protein family            161.6    3.5e-49   1

Parsed for domains:
Model          Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
--------       ------- ----- -----    ----- -----      -----  -------
Ribosomal_L38e   1/1       2    69 ..     1    77 []   161.6  3.5e-49

Alignments of top-scoring domains:
Ribosomal_L38e: domain 1 of 1, from 2 to 69: score 161.6, E = 3.5e-49
                   *->PrqIteIKdFLllARRkDAksvkvKkNkdknkaGkPfrnVKFKVRCS
                      P++I eIKdFL+ ARRkDAksvk+KkN++         n+KFKVRC
     C06B8.8     2    PKEIKEIKDFLVKARRKDAKSVKIKKNSN---------NTKFKVRCA 39

                   rYLYTLVvnDaeKAeKLkQSLPPgLkVkeL<-*
                   +YLYTLVv+D++KAeKLkQSLPPg++VkeL
     C06B8.8    40 SYLYTLVVADKDKAEKLKQSLPPGIQVKEL    69

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