Motif confirmation by HMMer
hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file: /home/niguts/usr02/tshini/ykclst/db/Pfam_fs
Sequence file: hmm1/seq/C06C3.1
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Query: C06C3.1 CE20486 locus:mel-11 ankyrin-like repeats status:Confirmed TR:Q17718 protein_id:CAA85318.1
Scores for sequence family classification (score includes all domains):
Model Description Score E-value N
-------- ----------- ----- ------- ---
ank Ankyrin repeat 150.0 4.1e-41 5
Bunya_NSM Non-structural protein NSM 2.4 7.4 1
Parsed for domains:
Model Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
ank 1/5 62 86 .. 9 33 .] 14.5 0.026
ank 2/5 87 119 .. 1 33 [] 36.5 1.3e-08
ank 3/5 120 152 .. 1 33 [] 45.2 4.5e-11
ank 4/5 213 245 .. 1 33 [] 28.3 2.8e-06
ank 5/5 246 278 .. 1 33 [] 28.0 3.6e-06
Bunya_NSM 1/1 514 544 .. 95 125 .. 2.4 7.4
Alignments of top-scoring domains:
ank: domain 1 of 5, from 62 to 86: score 14.5, E = 0.026
*->AakrgnlevvklLlqrGAdlnaqdd<-*
A+++g+ e v+ Ll++GA++n ++
C06C3.1 62 ACMSGDEEEVEELLNKGANINTCTV 86
ank: domain 2 of 5, from 87 to 119: score 36.5, E = 1.3e-08
*->dGnTPLHlAakrgnlevvklLlqrGAdlnaqdd<-*
dG T+LH + +e+v++L ++GAd+naqd+
C06C3.1 87 DGLTALHQSVIDSKPEMVRFLCEKGADVNAQDN 119
ank: domain 3 of 5, from 120 to 152: score 45.2, E = 4.5e-11
*->dGnTPLHlAakrgnlevvklLlqrGAdlnaqdd<-*
+G+TPLH Aa++gn+ +v++L q+GAdl +++
C06C3.1 120 EGWTPLHAAACCGNVAIVRYLCQHGADLSIVNS 152
ank: domain 4 of 5, from 213 to 245: score 28.3, E = 2.8e-06
*->dGnTPLHlAakrgnlevvklLlqrGAdlnaqdd<-*
G T+ H+Aa rg++++++lL+++G ++ aqd+
C06C3.1 213 TGGTAMHVAAGRGYTQLLELLIKAGGNVRAQDV 245
ank: domain 5 of 5, from 246 to 278: score 28.0, E = 3.6e-06
*->dGnTPLHlAakrgnlevvklLlqrGAdlnaqdd<-*
+G+TPLH Aa++ + + +k Ll++GA+l +
C06C3.1 246 EGWTPLHAAAHWAERDACKILLENGAELSDLTF 278
Bunya_NSM: domain 1 of 1, from 514 to 544: score 2.4, E = 7.4
*->VdtnhHiSnWKNDllVGNGndkaskvIkImP<-*
V t + S+ N + VG G++++s +I I+P
C06C3.1 514 VHTETPRSSMENSSSVGSGDQNVSATIPIVP 544