Motif confirmation by HMMer
hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file: /home/niguts/usr02/tshini/ykclst/db/Pfam_fs
Sequence file: hmm1/seq/C06G1.1
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Query: C06G1.1 CE27054 status:Partially_confirmed TR:Q17743 protein_id:AAK32948.1
Scores for sequence family classification (score includes all domains):
Model Description Score E-value N
-------- ----------- ----- ------- ---
LBP_BPI_CETP_C LBP / BPI / CETP family, C-terminal do 25.5 5.4e-06 1
LBP_BPI_CETP LBP / BPI / CETP family, N-terminal do 7.1 0.84 1
Parsed for domains:
Model Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
LBP_BPI_CETP 1/1 30 49 .. 1 20 [. 7.1 0.84
LBP_BPI_CETP_C 1/1 338 496 .. 93 256 .] 25.5 5.4e-06
Alignments of top-scoring domains:
LBP_BPI_CETP: domain 1 of 1, from 30 to 49: score 7.1, E = 0.84
*->tnPgivvRItnkgLeylnqe<-*
t Pg v+RI++k+L++++ +
C06G1.1 30 TSPGFVTRINKKALSIVSDQ 49
LBP_BPI_CETP_C: domain 1 of 1, from 338 to 496: score 25.5, E = 5.4e-06
*->cfgtflpelaeqyPnmqlelevsalsaPlisfspkngltvsvslsvk
c gt++p l++ +P ++ + +++s P++++ + t++ v+
C06G1.1 338 CAGTLFPALGTRFPGGEVVIKSHTVSYPRVVLRKN-NMTIYIDSRVD 383
afvvlPnstqreslfrlevdtnlsv.tlslngkrltGsLklrkiqlelkh
afv + + +r+ ++ +++++ ++++s++ l+G+L+ +k+++ +
C06G1.1 384 AFVQQQDR-SRR-FLTASMNAEVKLdKPSFKDFVLHGELRIDKFKVSDVA 431
SkvgdfsvellqafLnyilstllepavnekLgkGfplplpkrltlyDlvn
S v+ ++ +l+ + n + +l ++ ++kL G++lp + t
C06G1.1 432 SLVDGIDEGSLEFLVNALTELILNEDMAKKLKSGIQLPIMFDYTQQAAN- 480
PelqvhdnFLllgaDvey<-*
+++ d+ L++ aD+
C06G1.1 481 --VSIEDDMLHISADFCA 496