Motif confirmation by HMMer
hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file: /home/niguts/usr02/tshini/ykclst/db/Pfam_fs
Sequence file: hmm1/seq/C07A9.11
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Query: C07A9.11 CE00501 Na\/Ca, K antiporter status:Partially_confirmed SW:P34322 protein_id:CAA82341.1
Scores for sequence family classification (score includes all domains):
Model Description Score E-value N
-------- ----------- ----- ------- ---
Na_Ca_Ex Sodium/calcium exchanger protein 225.8 6.3e-64 2
Fumarate_red_D Fumarate reductase subunit D 9.7 0.24 1
OKR_DC_1_N Orn/Lys/Arg decarboxylase, N-terminal 4.1 2.9 1
Parsed for domains:
Model Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
OKR_DC_1_N 1/1 96 117 .. 1 22 [. 4.1 2.9
Na_Ca_Ex 1/2 22 156 .. 1 160 [] 112.2 1e-29
Fumarate_red_D 1/1 398 418 .. 100 121 .] 9.7 0.24
Na_Ca_Ex 2/2 441 579 .. 1 160 [] 121.2 1.9e-32
Alignments of top-scoring domains:
OKR_DC_1_N: domain 1 of 1, from 96 to 117: score 4.1, E = 2.9
*->MnilkIansqgvrsvfetvRel<-*
+++ I++s+++++vf+t+R+l
C07A9.11 96 VVSTIILTSPFDVEVFSTIRDL 117
Na_Ca_Ex: domain 1 of 2, from 22 to 156: score 112.2, E = 1e-29
*->lliilladllvdsaeaiaevtlgisesviGlTllAlGtSlPEliasi
+++ d++++s+++i +l+isesv+G+T++A+G+ +P+++ si
C07A9.11 22 MVSSAADDFFSPSISSIVA-HLRISESVAGVTFMAFGNGAPDVFGSI 67
iaalkrlgtgfek.kgdlalgnviGSnifNillvlGlaalIaIkvmyvlg
+++l +++k+dlalg ++G+ +f++++v+ ++ l
C07A9.11 68 ASVLS-----SPTpKADLALGELFGGGLFVTTMVVSTIIL---------- 102
invhivykeqefirpCqviivdggpltldfsflllvtlllllf.....rl
+p ++v++++ ++d++f+l+++ +l++ +r+
C07A9.11 103 ------------TSP---FDVEVFSTIRDLLFYLVALSFLAFCfvfynRV 137
srleglvLlllYivylvfl<-*
+ ++ l++l+lY++y++ +
C07A9.11 138 TLWMPLTFLGLYLLYVITV 156
Fumarate_red_D: domain 1 of 1, from 398 to 418: score 9.7, E = 0.24
*->gkWvFYGlAailsvvaligvlt<-*
g+Wv YGlA+ + li+v+t
C07A9.11 398 GLWV-YGLAVSIVLAILIMVFT 418
Na_Ca_Ex: domain 2 of 2, from 441 to 579: score 121.2, E = 1.9e-32
*->lliilladllvdsaeaiaevtlgisesviGlTllAlGtSlPEliasi
++i+l++ ++v+ ++ +++ + ++s v+GlT+lA+ +S+++lia++
C07A9.11 441 AWIYLISSEVVNVVTMLGV-VSRVSHEVLGLTILAWSNSIGDLIADV 486
iaalkrlgtgfekkgdlalgnviGSnifNillvlGlaalIaIkvmyvlgi
+++++ g ++++a++++iG+++fN+l++ Gl++
C07A9.11 487 SVVKQ----G---YPRMAMAAAIGGPLFNLLMGFGLPFT----------- 518
nvhivykeqefirpCqviivdggpltldfsflllvtlllllf........
+ + ++ i ++ + t +++l+l++ ll+ + + + +
C07A9.11 519 -------IAKLQGK---YISMTINPTYRLLILFLAISLLATLigipvqkf 558
rlsrleglvLlllYivylvfl<-*
rl r ++vL+++Yi+++vf+
C07A9.11 559 RLQRPHAAVLISIYIAFIVFV 579