hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /home/niguts/usr02/tshini/ykclst/db/Pfam_fs
Sequence file:            hmm1/seq/C08A9.7
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Query:  C08A9.7  CE06789    status:Partially_confirmed TR:Q17810 protein_id:AAB53819.1

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N
-------- -----------                                    -----    ------- ---
DUF278   DUF278                                         581.7   4.6e-171   1
DUF634   Protein of unknown function (DUF634)             1.8        7.9   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
DUF634     1/1      22    41 ..     1    20 [.     1.8      7.9
DUF278     1/1      34   326 ..     1   399 []   581.7 4.6e-171

Alignments of top-scoring domains:
DUF634: domain 1 of 1, from 22 to 41: score 1.8, E = 7.9
                   *->ertepekkrafpysiddiLg<-*
                      + ++p  +++fp+ +d++L+
     C08A9.7    22    RTPSPLMPASFPITMDEYLE    41

DUF278: domain 1 of 1, from 34 to 326: score 581.7, E = 4.6e-171
                   *->ITmeeYlelekkkfvktatKdvavKKvvLsLLEnypRnLGqKstiFG
                      ITm+eYle+e+++fv++a+Kd+a+KK++L+LLE yp
     C08A9.7    34    ITMDEYLEKENREFVVNASKDIAMKKLALTLLELYP----------- 69

                   KelWksgnnCKHFiqYPnKqiKtKLLKLksspdkWealGRaEVfrRTGni
                    e+Wk+g+                    +++++kW+a+G aE++rRTG
     C08A9.7    70 -EMWKPGG--------------------PMVAKKWQAFG-AEMYRRTG-- 95

                   HCFKFHKFkiVrvGCLFFYtDFLHFnskdLRkmlvsaKsvLKrKLrkCIk
                           ki+r+              kdL+++++++Ks++KrKLr+CI+
     C08A9.7    96 --------KIYRC--------------KDLHSVFTLTKSSIKRKLRTCIL 123

                   ikkMDRaatEaeLwkWEfYphFrYYRetLGqFEAklRgrTGNEARNSEpw
                   ik+M+R++t++e+wk+E+Yp+F+YYR+++GqFEAklR+         Epw
     C08A9.7   124 IKRMHRSKTDEEMWKYELYPYFQYYRQSIGQFEAKLRD---------EPW 164

                   tGEdqasdddDdIiydgifEvDssseelnnPAaddipaveetitpGGsvA
                   tGEdqa++ddD I++dg+fEv++++++      +++pa+ee+++
     C08A9.7   165 TGEDQAQEDDD-ILFDGLFEVENNFVH------NGLPAMEEKVR------ 201

                   smAEAGfteevlrdpfenqfekpeqvrealpPemlqaasstPsiphgqsp
                         f++++++d+++n+f+++++++++   +m+++++s+++i+h++s+
     C08A9.7   202 ------FSANLHTDEQANMFDTQTENVDN---MMGAYTDSFSQIRHETSK 242

                   SdenssaieahiesqkfksnfesapesrtvdksAssIgeQDsvsYtKiik
                   S++n+++i+a+ie+++        +++r++dk+A++Ig+Q        +k
     C08A9.7   243 SPMNAQSINASIEYEN--------VPVRQIDKTADNIGDQ--------VK 276

                   RLFeqyPEKskLIRevLFKTILALDDPeAefsnagdvFeDLaaqEnaKrr
                   +LF+++P++++++RevLFKT+L+L+DP  +f+nag++F++++++E+aKrr
     C08A9.7   277 QLFVDHPDRANFFREVLFKTVLELRDP--AFTNAGVFFDEMSSLESAKRR 324

                   rR<-*
                   rR
     C08A9.7   325 RR    326

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