hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /home/niguts/usr02/tshini/ykclst/db/Pfam_fs
Sequence file:            hmm1/seq/C08B11.2
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Query:  C08B11.2  CE01472  locus:hda-2 transcriptional regulatory protein (RPD3) status:Partially_confirmed SW:Q09440 protein_id:CAA86662.1

Scores for sequence family classification (score includes all domains):
Model         Description                               Score    E-value  N
--------      -----------                               -----    ------- ---
Hist_deacetyl Histone deacetylase family                572.4   2.9e-168   1

Parsed for domains:
Model         Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
--------      ------- ----- -----    ----- -----      -----  -------
Hist_deacetyl   1/1      29   342 ..     1   350 []   572.4 2.9e-168

Alignments of top-scoring domains:
Hist_deacetyl: domain 1 of 1, from 29 to 342: score 572.4, E = 2.9e-168
                   *->rtvgyvydpevlnheckisygatHpenpeRlrlihelLleygllkkm
                      r+v+y+y+ +v++++    yg+ Hp++p+Rl  +++l+++y + k+m
    C08B11.2    29    RNVAYYYHKDVGHFH----YGQLHPMKPQRLVVCNDLVVSYEMPKYM 71

                   eivtnsqeprkatdeelllvHsedyvefleslsktnleelekgtdkille
                   ++v+      k+++++++++H+edyv+fl+ ++++ + ++++++
    C08B11.2    72 TVVE----SPKLDAADISVFHTEDYVNFLQTVTPKLGLTMPDDV------ 111

                   ielkyfnkgdDtpvfaglyeaarlavGgsleladrllegeldnafnwagG
                     l++fn+g+D+p+fagl+++++l++Ggs+e+a+rl++++ d+ +nw+gG
    C08B11.2   112 --LRQFNIGEDCPIFAGLWDYCTLYAGGSVEGARRLNHKMNDIVINWPGG 159

                   PgHHAkkgeasGFCyfNNvAiAikyllkkyPlyvkRVliiDfDvHHGDGT
                    +HHAkk+easGFCy+N+++++i++llk    y+kRVl+iD+D+HHGDG+
    C08B11.2   160 -LHHAKKSEASGFCYVNDIVLGILELLK----YHKRVLYIDIDIHHGDGV 204

                   QeiFydddrVltvSfHkygkGefFPGtieGditeiGkgkGkgytlNiPLn
                   Qe+F ++drV+tvSfH++g  ++FPG+  G+i+++G+g Gk++++N+PL
    C08B11.2   205 QEAFNNSDRVMTVSFHRFG--QYFPGS--GSIMDKGVGPGKYFAINVPL- 249

                   edgtdDesYlsafkhviepvleqFkPdaivisaGfDalygDptqLgsfnL
                   ++ ++De Yl +f++vi+ v e F P+aiv+++G D+l+ D+  Lg+f+L
    C08B11.2   250 MAAIRDEPYLKLFESVISGVEENFNPEAIVLQCGSDSLCEDR--LGQFAL 297

                   tiegygemvrflkslaqkhcdgpllvvlEGGYtlraianvarcwialtgg
                   + +++++ v+++ksl+      pl+v+++GGYtlr   nvarcw+ +tg+
    C08B11.2   298 SFNAHARAVKYVKSLG-----KPLMVLGGGGYTLR---NVARCWALETGV 339

                   llg<-*
                   +lg
    C08B11.2   340 ILG    342

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