hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /home/niguts/usr02/tshini/ykclst/db/Pfam_fs
Sequence file:            hmm1/seq/C08B11.6
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Query:  C08B11.6  CE30856   actin status:Confirmed TN:CAA86667 protein_id:CAA86667.3

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N
-------- -----------                                    -----    ------- ---
actin    Actin                                          109.8      5e-33   1
Myosin_N Myosin N-terminal SH3-like domain                4.5        8.7   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
Myosin_N   1/1      39    50 ..     1    12 [.     4.5      8.7
actin      1/1       1   389 [.     1   379 []   109.8    5e-33

Alignments of top-scoring domains:
Myosin_N: domain 1 of 1, from 39 to 50: score 4.5, E = 8.7
                   *->KknVWVpDekeg<-*
                      Kk V+V++e+e+
    C08B11.6    39    KKRVFVAHEQEE    50

actin: domain 1 of 1, from 1 to 389: score 109.8, E = 5e-33
                   *->msdeevqalvvDnGsgmvKaGfaGddapravfpsivgrpkhkgvmvg
                      ms    ++++ DnG   +K G    ++pr v  siv          +
    C08B11.6     1    MSL---TTIIFDNGGHNMKIGTIDSESPRLVPNSIVK--------AK 36

                   agmdqkdayvgdEaqskrgiltlkY..PiehGivtnwddmekiwhhtfYn
                      ++k  +v+ E ++  +   l Y +Pie+G v nwd  ++iw+ tf
    C08B11.6    37 --HEKKRVFVAHEQEECSDKFSLFYvrPIERGYVVNWDTQQQIWEKTF-G 83

                   ELrvapeeHpvLLtEaPlnPKanREkmtqimFEtfnvpamYvaiqavLsL
                    + v++    + Lt+      a  +   +i+F+ f +  +     + L
    C08B11.6    84 SMDVEASTSRIALTDNNYLIPALPDVSSEILFDYFGFTEVHKTSASTLVA 133

                   yasGRt....tGivlDsGDGvsHtvpiyeGyalpHailrldlAGRDLtdy
                     s + ++++  +v+DsG   + + +  +G  +  ++ r+d+ G+ Lt+
    C08B11.6   134 KHSNKInnekCAVVVDSGFSWTTVASFVNGMLIQDSVIRIDVGGKALTNK 183

                   lmkiLtergysftttAerEivrdiKEkLcyvAldyeeelktak...esse
                   l  ++  r  +++ + e  ++ + KE Lc+v  +++e +k+a+++ ++++
    C08B11.6   184 LKDWVSYR--QLNVSEETYVINECKEDLCFVSQNFDESMKEARnrfQENT 231

                   leksyeLpD......Gqv.............itigneRfrcpevLfqpsl
                     k y +pD +++ +G v++ +++++++ ++i++g eRf  pe+Lf+ps
    C08B11.6   232 TMKRYIMPDfhstfrGVVkdvkephdpqipsIHLGVERFAIPEILFNPSD 281

                   lggkEaagihettynsimkCDvDiRkdLygnivLsGGttmfpgiaerlsk
                   +   +  g+ e++ +si +C   +R  L +ni++ GG++ fpg  erl++
    C08B11.6   282 I-DIDQCGVAEAVIESICQCPEALRPALAENIIVIGGSSCFPGFRERLER 330

                   eitalaPssmkikv...iapPeRkysvWiGGsilasLstfqqmwitKeeY
                   e++++ P    + v++++  P+ +   W  G  l  L++ +  wi ++++
    C08B11.6   331 EVRSMLPAEYGLNVsndVINPQTH--SWHCGQEL--LTASKVPWINRKDW 376

                   desGpsivHrKCf<-*
                   de G+s+     f
    C08B11.6   377 DERGDSLEFSNFF    389

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