Motif confirmation by HMMer
hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file: /home/niguts/usr02/tshini/ykclst/db/Pfam_fs
Sequence file: hmm1/seq/C08B11.7
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Query: C08B11.7 CE01477 thiolesterase status:Partially_confirmed SW:Q09444 protein_id:CAA86665.1
Scores for sequence family classification (score includes all domains):
Model Description Score E-value N
-------- ----------- ----- ------- ---
Peptidase_C12 Ubiquitin carboxyl-terminal hydrolase, 390.0 2.4e-113 1
Parsed for domains:
Model Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
Peptidase_C12 1/1 11 215 .. 1 229 [] 390.0 2.4e-113
Alignments of top-scoring domains:
Peptidase_C12: domain 1 of 1, from 11 to 215: score 390.0, E = 2.4e-113
*->rWlpLESnPgVfTelieklGvkgdEvqveDvysLddElLemiprPvh
+W+++ES+PgVfTe+++++Gv+g qve++ysLd ++ + ++rP++
C08B11.7 11 SWCLIESDPGVFTEMLRGFGVDG--LQVEELYSLD-DD-KAMTRPTY 53
AlIFLFpwtekveekrkeepkgikvqdqdvsdsvFFaKQtIpNACGTqAL
+lIFLF+w+++ +e++gi + d+ ++ +FFa+QtI+NAC+TqAL
C08B11.7 54 GLIFLFKWRQG------DETTGIPS-DK--QN-IFFAHQTIQNACATQAL 93
LHaLlNnedeidvdlGstLkrFleftkdlsPeeRgkaLeNseeiraaHNS
+++L+N+e ++dv+lG++L++++ef+ dl+P++Rg++L+Nseeir++HNS
C08B11.7 94 INLLMNVE-DTDVKLGNILNQYKEFAIDLDPNTRGHCLSNSEEIRTVHNS 142
faraqegqteekeaaGlSvrdedvnyHFIayVpinGtLYELDGrkegPin
f+r++++++++k + + ++nyHF++yVpi++++YELDG++e P++
C08B11.7 143 FSRQTLFELDIKGG------ESEDNYHFVTYVPIGNKVYELDGLRELPLE 186
hGetsetaTdtllkDavrpVikermeryseee<-*
++e+++ ++++++a++pVi++rm++yse+e
C08B11.7 187 VAEFQK---EQDWIEAIKPVIQQRMQKYSEGE 215