Motif confirmation by HMMer
hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file: /home/niguts/usr02/tshini/ykclst/db/Pfam_fs
Sequence file: hmm1/seq/C08F1.4a
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Query: C08F1.4a CE27059 status:Partially_confirmed TR:O17175 protein_id:AAK31407.1
Scores for sequence family classification (score includes all domains):
Model Description Score E-value N
-------- ----------- ----- ------- ---
MATH MATH domain 387.0 1.8e-112 5
Ribosomal_L31 Ribosomal protein L31 6.3 4.2 1
Parsed for domains:
Model Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
MATH 1/5 2 31 .. 127 159 .] 18.9 0.00065
Ribosomal_L31 1/1 69 77 .. 63 71 .] 6.3 4.2
MATH 2/5 53 169 .. 1 159 [] 111.8 1.3e-29
MATH 3/5 200 314 .. 1 159 [] 89.8 1.9e-23
MATH 4/5 336 449 .. 1 159 [] 141.8 1.3e-38
MATH 5/5 466 520 .] 1 78 [. 45.5 2.9e-11
Alignments of top-scoring domains:
MATH: domain 1 of 5, from 2 to 31: score 18.9, E = 0.00065
*->sGfkkFisWddLeddyngylvdDsiiiEaeVkI<-*
+G+ k+++W++L ++ lv+Ds+++Ea ++
C08F1.4a 2 KGYRKLMKWEKLVSNH---LVNDSVTVEADLNV 31
Ribosomal_L31: domain 1 of 1, from 69 to 77: score 6.3, E = 4.2
*->RFnkKYnik<-*
RF+k++ni+
C08F1.4a 69 RFEKRFNIP 77
MATH: domain 2 of 5, from 53 to 169: score 111.8, E = 1.3e-29
*->tiknfSkikeeakeGregeeyytspyeerfnipWrlnvlriyrnggg
+ ++S+i+ ege++++ e+rfnipWr + ++r g
C08F1.4a 53 QFSDVSRIE-------EGESRFS-RFEKRFNIPWR---IELQRVSG- 87
egrsgkflglyLhClkeekdsptienlkWsieteftlklvsdnGksirrm
fl+++Lh e +++ + i +++++ lvs nGk
C08F1.4a 88 ------FLEIHLHRGIEIEKP---DDVFTIIKADCWFNLVSTNGKN---- 124
ssttltkktkdaknnshvFekptgegwgksGfkkFisWddLeddyngylv
l+++++ vF++ + ++ k k i+Wdd+++dy ++
C08F1.4a 125 ----LMRQMS------AVFCRDVDMESLK----KVIRWDDMMTDY---VI 157
dDsiiiEaeVkI<-*
+Ds+iiEa+++I
C08F1.4a 158 NDSFIIEAHIEI 169
MATH: domain 3 of 5, from 200 to 314: score 89.8, E = 1.9e-23
*->tiknfSkikeeakeGregeeyytspyeerfnipWrlnvlriyrnggg
++ n+S++ +ge ++e r++ipWr ++ +r +
C08F1.4a 200 KVNNVSRFQ-------DGEKQWG-NTELRYDIPWR---IQTKRSLD- 234
egrsgkflglyLhClkeekdsptienlkWsieteftlklvsdnGksirrm
fl+lyL C+ ++ s k i+t++t+ lvs nG+
C08F1.4a 235 ------FLELYLFCDEDDNVS------KKLIQTKCTFNLVSTNGNN---- 268
ssttltkktkdaknnshvFekptgegwgksGfkkFisWddLeddyngylv
++ k +Fekp g g ++ F++W+d+ + + l+
C08F1.4a 269 ----YRRTSK------LCFEKPGGQGISG-----FFKWNDMIESF---LN 300
..dDsiiiEaeVkI<-*
+ +Ds+i+Ea+VkI
C08F1.4a 301 plEDSLIVEAHVKI 314
MATH: domain 4 of 5, from 336 to 449: score 141.8, E = 1.3e-38
*->tiknfSkikeeakeGregeeyytspyeerfnipWrlnvlriyrnggg
+++n+S++ eg+ ++ ++e+++ipW+ ++++ +g
C08F1.4a 336 VVRNVSNMV-------EGGVIFS-ASQEWYDIPWS---ISMKYING- 370
egrsgkflglyLhClkeekdsptienlkWsieteftlklvsdnGksirrm
f++l L C+ke ++ Wsiet f+l lv +nGk+
C08F1.4a 371 ------FVELLLSCDKELNAH-----EAWSIETNFQLILVGANGKR---- 405
ssttltkktkdaknnshvFekptgegwgksGfkkFisWddLeddyngylv
lt + h+Fekp+++g +k +i+W+d++d+y v
C08F1.4a 406 ----LTDYFE------HTFEKPDSIGDSK-----LIRWEDMLDQY---AV 437
dDsiiiEaeVkI<-*
+Ds+++Ea+V+
C08F1.4a 438 EDSLTVEARVNF 449
MATH: domain 5 of 5, from 466 to 520: score 45.5, E = 2.9e-11
*->tiknfSkikeeakeGregeeyytspyeerfnipWrlnvlriyrnggg
t+kn S++ ege +++ ++e++ + pWr ++++++
C08F1.4a 466 TVKNLSNVH-------EGEFHFS-KTEKHCDAPWR---ISLKKEEM- 500
egrsgkflglyLhClkeekdsptienlkWsi<-*
l +yLhC+k+ +s + Ws+
C08F1.4a 501 ------CLLIYLHCDKL--LS---NDEHWSV 520